ORFik is in the devel builds: http://bioconductor.org/checkResults/devel/bioc-LATEST/index.html
as well as in the release builds: http://bioconductor.org/checkResults/release/bioc-LATEST/index.html This indicates that the package has been accepted and added to Bioconductor before we released Bioconductor 3.7 back in April. Upon acceptance of your package you should have received an email (off issue tracker) with important information about how to maintain a Bioconductor package. One important bit to keep in mind is that your package is now hosted at git.bioconductor.org in addition to be on GitHub, so you need to maintain it at both locations (modifying it on GitHub doesn't affect the copy on git.bioconductor.org, unless you take action). The links Lori sent in her email below explain you how to do this. FWIW here is the full collection of HOWTO documents that extensively cover the topic of maintaining a Bioconductor package via git/GitHub: http://bioconductor.org/developers/how-to/git/ H. On 09/05/2018 06:52 AM, Shepherd, Lori wrote:
Your package has been accepted and officially added to the devel version of Bioconductor. You need to follow the instructions for setting up remotes and pushing to the git.bioconductor.org server. The webhook may be deactivated and is only used during the submission process. https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_developers_how-2Dto_git_sync-2Dexisting-2Drepositories_&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=Asx6gaOwY0Z5CgT-ST6S6E1x3niqMsE76PJRThTxe6M&s=mRb0qxlTslceHfqLDPat_Bkx_cP-usXqFZI9DmtsAqY&e= https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_developers_how-2Dto_git_push-2Dto-2Dgithub-2Dbioc_&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=Asx6gaOwY0Z5CgT-ST6S6E1x3niqMsE76PJRThTxe6M&s=Oce8HvjdQAYlh36NBUU0AUpo3nkdkEFqvJvK8YzUXXo&e= Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of H�kon Tjeldnes <hauken_hey...@hotmail.com> Sent: Wednesday, September 5, 2018 9:39:42 AM To: bioc-devel@r-project.org Subject: [Bioc-devel] Web hook push error I noticed today that since release, the web hook has not pushed: Web hook bar is green, with the message: can't build unless issue is open and has the '2. review in progress' label, or is closed and has the 'TESTING' label. This is for the package ORFik Have we set up the web hook in the wrong way ? [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=Asx6gaOwY0Z5CgT-ST6S6E1x3niqMsE76PJRThTxe6M&s=Or_DF3OO0pZW-21R4n_QqIqrQIrOhGssX9bm0EuLQyQ&e= This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=Asx6gaOwY0Z5CgT-ST6S6E1x3niqMsE76PJRThTxe6M&s=Or_DF3OO0pZW-21R4n_QqIqrQIrOhGssX9bm0EuLQyQ&e=
-- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319 _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
