As far as Git is concerned yes a change was made, but it was probably a move or a rename. So how do we move forward? paxtoolsr has been greater than 5MB for all of its history (4-5 years) on Bioconductor; the package cannot exist without that jar.
Thanks, Augustin Luna On Thu, Sep 20, 2018 at 4:50 PM, Turaga, Nitesh <nitesh.tur...@roswellpark.org> wrote: > Hi Augustin, > > There is a software package size limit to Bioconductor packages which is 5 > MB. You cannot push because the pre-receive hook on the Bioconductor git repo > is catching that it’s a bad commit. > > I guess you are making a change to the jar file for the first time after the > git-hooks have been put in place(about 9-10 months ago) to make sure that > packages are obeying the 5MB limit. Is this accurate? > > Best, > > Nitesh > >> On Sep 20, 2018, at 5:09 PM, Augustin Luna <augustin_l...@hms.harvard.edu> >> wrote: >> >> I've made needed changes to paxtoolsr for the next release. I cannot >> push to Bioconductor; see below. paxtoolsr is essentially a wrapper >> around the jar with helper functions; the jar has been there since the >> beginning. Please advise. >> >> Augustin Luna >> >> Writing objects: 100% (1252/1252), 22.33 MiB | 1.65 MiB/s, done. >> Total 1252 (delta 988), reused 741 (delta 596) >> remote: Resolving deltas: 100% (988/988), completed with 80 local objects. >> remote: Error: file larger than 5 Mb. >> remote: >> remote: File name: 'inst/java/paxtools-4.3.1.jar' >> remote: File size: 24.5 Mb >> remote: >> remote: Please see Biocondcutor guidelines >> remote: https://bioconductor.org/developers/package-guidelines/ >> remote: >> To git.bioconductor.org:packages/paxtoolsr.git >> ! [remote rejected] master -> master (pre-receive hook declined) >> error: failed to push some refs to >> 'g...@git.bioconductor.org:packages/paxtoolsr.git' >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
