To generate mouse.rda, I used: library(rtracklayer) mouse <- readGFF(" ftp://ftp.ensembl.org/pub/release-93/gtf/mus_musculus/Mus_musculus.GRCm38.93.chr.gtf.gz ")
And then I saved the object as mouse.rda On Tue, Sep 25, 2018 at 6:33 PM Bohdan Khomtchouk <khomtchouk...@gmail.com> wrote: > Here it is: > https://github.com/Bohdan-Khomtchouk/geneXtendeR/blob/master/data/mouse.rda > > > On Tue, Sep 25, 2018 at 6:23 PM Vincent Carey <st...@channing.harvard.edu> > wrote: > >> (resending with reply all -- please reply to this one) >> >> Can you say some more about the content of the file? Perhaps it can be >> placed in ExperimentHub. "mouse.rda" is not very descriptive. is it >> in your github repo? >> >> >> On Tue, Sep 25, 2018 at 6:25 PM, Bohdan Khomtchouk < >> khomtchouk...@gmail.com> wrote: >> >>> I need to include an important .rda file in the /data folder of my >>> Bioconductor package. However, this .rda file exceeds 5 Mb in size. Do >>> I >>> have any other options besides for deleting it? >>> >>> bohdankhomtchouk$ git push origin master >>> >>> Counting objects: 65, done. >>> >>> Delta compression using up to 8 threads. >>> >>> Compressing objects: 100% (65/65), done. >>> >>> Writing objects: 100% (65/65), 13.79 MiB | 7.62 MiB/s, done. >>> >>> Total 65 (delta 30), reused 0 (delta 0) >>> >>> remote: Error: file larger than 5 Mb. >>> >>> remote: >>> >>> remote: File name: 'data/mouse.rda' >>> >>> remote: File size: 12.9 Mb >>> >>> remote: >>> >>> remote: Please see Biocondcutor guidelines >>> >>> remote: https://bioconductor.org/developers/package-guidelines/ >>> >>> remote: >>> >>> To git.bioconductor.org:packages/geneXtendeR >>> >>> ! [remote rejected] master -> master (pre-receive hook declined) >>> >>> error: failed to push some refs to 'g...@git.bioconductor.org: >>> packages/geneXtendeR' >>> >>> -- >>> Bohdan Khomtchouk, Ph.D. >>> AHA Postdoctoral Fellow, Gozani & Assimes Labs >>> Department of Biology & Department of Medicine >>> Division of Cardiovascular Medicine >>> Stanford University >>> Stanford, CA 94305 >>> https://profiles.stanford.edu/bohdan-khomtchouk >>> >>> >>> CONFIDENTIALITY NOTICE: Information contained in this me...{{dropped:9}} >>> >>> _______________________________________________ >>> Bioc-devel@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >>> >> >> >> The information in this e-mail is intended only for t...{{dropped:17}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel