I am the developer of the variancePartition package, and I recently made some very small changes to the documentation of my package. The latest version 1.10.3 builds correctly on Bioconductor's Windows and OS X machines but fails on Ubuntu:
http://bioconductor.org/checkResults/release/bioc-LATEST/variancePartition/malbec2-buildsrc.html The code in the package has been stable, and I am not able to reproduce the error on by Ubuntu machine 14.04.5 LTS with R 3.5.1. The issue has something to do with multithreading using doParallel. The error is: Warning in socketConnection("localhost", port = port, server = TRUE, blocking = TRUE, : port 11104 cannot be opened Quitting from lines 102-154 (variancePartition.Rnw) Error: processing vignette 'variancePartition.Rnw' failed with diagnostics: cannot open the connection Execution halted With the Bioconductor 3.7 Freeze coming, I�m concerned about getting stuck with a broken package. Thanks, - Gabriel [[alternative HTML version deleted]]
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