Hi, “biocLite" will stay deprecated for R version 3.5.2. Please note that the issue is not with “biocLite" but with “mmnet".
“mmnet” has been deprecated for R-3.5.z and is defunct for R-3.6.z. There are other workaround solutions to this, where you may install the package from the tarball (https://www.bioconductor.org/packages/3.5/bioc/src/contrib/mmnet_1.13.0.tar.gz) using, R CMD INSTALL mmnet_1.13.0 This way, you can have the latest release version of R and have all packages up-to date except for “mmnet”. But I think this question is better served answered in Bioc-devel. So I am forwarding the email. Best, Nitesh > On Dec 26, 2018, at 8:26 AM, osama ali <bioos...@aucegypt.edu> wrote: > > Dear Support Team > Can I ask to have "biocLite" package not deprecated in R version 3.5.2 since > I would like to use "mmnet" package in my metagenomic analysis in R by > accessing my account in Mg-RAST server. > I am not an experienced user but I get the following warning each time I call > "biocLite()": > > "Warning messages: > 1: 'biocLite' is deprecated. > Use 'BiocManager::install' instead." > I appreciate your kind support to solve this problem. > Thank you very much > Osama > > > Osama S. Ali, MSc. > Technical Operations Manager > Biology Department, The American University in Cairo. > AUC Avenue, P.O. Box 74 > New Cairo 11835, Egypt. > tel.: 20.2.2615.2914 > fax: 20.2.2795.7565 > www.aucegypt.edu This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
