Hi,
According to http://bioconductor.org/checkResults/devel/bioc-LATEST/index.html all SPB machines run different snapshots of R-devel with the most recent one (2019-01-22 r76000, already >1 month outdated) installed on celaya2. I observe two things: 1. My package builds on celaya2, but fails to build on the other SPB machines running older R-devel snapshots. http://bioconductor.org/checkResults/devel/bioc-LATEST/CNVRanger/ 2. Further, I can't reproduce the SPB built error using a recent R-devel snapshot (2019-02-24 r76155) through the bioconductor/devel_base2 docker container. Can you please advise on how to best proceed from my side? Just wait for the SPB R-devel being updated? > sessionInfo() R Under development (unstable) (2019-02-24 r76155) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Debian GNU/Linux 9 (stretch) Matrix products: default BLAS/LAPACK: /usr/lib/libopenblasp-r0.2.19.so locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=C [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats4 parallel stats graphics grDevices utils datasets [8] methods base other attached packages: [1] TCGAutils_1.3.19 [2] BSgenome.Btaurus.UCSC.bosTau6.masked_1.3.99 [3] BSgenome.Btaurus.UCSC.bosTau6_1.4.0 [4] BSgenome_1.51.0 [5] rtracklayer_1.43.1 [6] Biostrings_2.51.2 [7] XVector_0.23.0 [8] regioneR_1.15.2 [9] BiocStyle_2.11.0 [10] CNVRanger_0.99.7 [11] curatedTCGAData_1.5.8 [12] edgeR_3.25.3 [13] limma_3.39.12 [14] RaggedExperiment_1.7.4 [15] MultiAssayExperiment_1.9.15 [16] SummarizedExperiment_1.13.0 [17] DelayedArray_0.9.8 [18] BiocParallel_1.17.16 [19] matrixStats_0.54.0 [20] ensembldb_2.7.9 [21] AnnotationFilter_1.7.0 [22] GenomicFeatures_1.35.7 [23] AnnotationDbi_1.45.0 [24] Biobase_2.43.1 [25] GenomicRanges_1.35.1 [26] GenomeInfoDb_1.19.2 [27] IRanges_2.17.4 [28] S4Vectors_0.21.10 [29] AnnotationHub_2.15.7 [30] BiocGenerics_0.29.1 loaded via a namespace (and not attached): [1] ProtGenerics_1.15.0 bitops_1.0-6 [3] bit64_0.9-7 progress_1.2.0 [5] httr_1.4.0 GenomicDataCommons_1.7.3 [7] tools_3.6.0 R6_2.4.0 [9] DBI_1.0.0 lazyeval_0.2.1 [11] tidyselect_0.2.5 prettyunits_1.0.2 [13] bit_1.1-14 curl_3.3 [15] compiler_3.6.0 rvest_0.3.2 [17] xml2_1.2.0 readr_1.3.1 [19] rappdirs_0.3.1 stringr_1.4.0 [21] digest_0.6.18 Rsamtools_1.99.2 [23] rmarkdown_1.11 pkgconfig_2.0.2 [25] htmltools_0.3.6 rlang_0.3.1 [27] rstudioapi_0.9.0 RSQLite_2.1.1 [29] shiny_1.2.0 jsonlite_1.6 [31] dplyr_0.8.0.1 RCurl_1.95-4.11 [33] magrittr_1.5 GenomeInfoDbData_1.2.0 [35] Matrix_1.2-15 Rcpp_1.0.0 [37] stringi_1.3.1 yaml_2.2.0 [39] zlibbioc_1.29.0 grid_3.6.0 [41] blob_1.1.1 promises_1.0.1 [43] ExperimentHub_1.9.1 crayon_1.3.4 [45] lattice_0.20-38 hms_0.4.2 [47] locfit_1.5-9.1 knitr_1.21 [49] pillar_1.3.1 biomaRt_2.39.2 [51] XML_3.98-1.17 glue_1.3.0 [53] evaluate_0.13 BiocManager_1.30.4 [55] httpuv_1.4.5.1 purrr_0.3.0 [57] assertthat_0.2.0 xfun_0.5 [59] mime_0.6 xtable_1.8-3 [61] later_0.8.0 tibble_2.0.1 [63] GenomicAlignments_1.19.1 memoise_1.1.0 [65] interactiveDisplayBase_1.21.0 [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel