Dear Lori,
I checked our package OUTRIDER on the devel branch and I guess that the error arises from a misconfiguration on the OSX platform. It looks like a problem with the cairo library/package on the OSX system. ── 1. Error: plotting (@test_plotting.R#9) ──────────────────────────────────── .onLoad failed in loadNamespace() for 'Cairo', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Cairo/libs/Cairo.so': dlopen(/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Cairo/libs/Cairo.so, 6): Symbol not found: _FcConfigGetCurrent Referenced from: /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Cairo/libs/Cairo.so Expected in: flat namespace in /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Cairo/libs/Cairo.so A detailed error message can be found here: http://bioconductor.org/checkResults/devel/bioc-LATEST/OUTRIDER/merida2-checksrc.html This same error was already reported in 2015 and fixed pretty fix but without stating the bugfix: https://stat.ethz.ch/pipermail/bioc-devel/2015-June/007644.html And we are also not the only package having the problem: https://bioc.ism.ac.jp/checkResults/devel/bioc-LATEST/CATALYST/merida2-checksrc.html https://bioc.ism.ac.jp/checkResults/devel/bioc-LATEST/scde/merida2-checksrc.html https://bioc.ism.ac.jp/checkResults/devel/bioc-LATEST/singscore/merida2-checksrc.html ... Let me know if you need any more information on this and if I can help solving this. Best, Chriss PS: I also updated the package to remove the warning. Am 2/23/2019 um 2:49 AM schrieb Felix Brechtmann: > > Hi, > > > Can you please check this. > > > Felix > > > > -------- Forwarded Message -------- > Subject: failing package OUTRIDER > Date: Fri, 22 Feb 2019 13:32:52 +0000 > From: Shepherd, Lori <lori.sheph...@roswellpark.org> > To: brech...@in.tum.de <brech...@in.tum.de> > > > > Dear OUTRIDER maintainer, > > I'd like to bring to your attention that the OUTRIDER package is > failing to pass 'R CMD check' on all platforms in the devel version of > Bioconductor (3.9) > > http://bioconductor.org/checkResults/devel/bioc-LATEST/OUTRIDER/ > > Would you mind taking a look at this? Don't hesitate to ask on the > bioc-devel@r-project.org mailing list if you have any question or need > help. > > > While devel is a place to experiment with new features, we expect > packages to build and check cleanly in a reasonable time period and > not stay broken for any extended period of time. The package has > been failing since 01/25/19 > > If no action is taken over the next few weeks we will begin the > deprecation process for your package. > > Thank you for your time and effort, and your continued contribution to > Bioconductor. > > Pleae be advised that Bioconductor has switched from svn to Git. Some > helpful links can be found here: > https://bioconductor.org/developers/how-to/git/ > http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/ > > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Cancer Institute > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee > or agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately > by e-mail and delete this email message from your computer. Thank you. -- *Christian Mertes* | PhD Student / Lab Administrator *Gagneur Lab* - Computational Genomics I12 - Department of Informatics Technical University of Munich Boltzmannstr. 3, 85748 Garching, Germany mer...@in.tum.de <mailto:mer...@in.tum.de> | http://gagneurlab.in.tum.de [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel