Hi Laurent, This is temporary. We're in the process of creating the 3.10 annotation repo by "forking" the 3.9 annotation repo. As part of this process, we run a script that generates the PACKAGES index for the new 3.10 annotation repo. The process will take a few more hours before it completes. Then this warning should go away.
Sorry for the inconvenience. Cheers, H. On 5/28/19 13:04, Laurent Gatto wrote: > Travis recently started to fail for Bioc devel (see [0] and [1] for another > possibly related report), which seems to related to a warning in > BiocManager::available(): > >> BiocManager::version() > [1] ‘3.10’ >> str(BiocManager::available()) > Warning: unable to access index for repository > https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_packages_3.10_data_annotation_src_contrib&d=DwIF-g&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=UAmM0hNRENFU1Y4T29z5hJJHFLKXbyWj2W8KtGaqZEE&s=I-j2hOB7kAvw9DSOUy8nHyxKb5KH19tqAAxuwZ5E8HY&e= > : > cannot open URL > 'https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_packages_3.10_data_annotation_src_contrib_PACKAGES&d=DwIF-g&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=UAmM0hNRENFU1Y4T29z5hJJHFLKXbyWj2W8KtGaqZEE&s=E4iryKtRU-QLj7b-IdceimIOQCK_Ch9bdKzN-YgZMwE&e= > ' > chr [1:16400] "a4" "a4Base" "a4Classif" "a4Core" "a4Preproc" "a4Reporting" > ... > > Is this a temporary or known issue? > > Thanks in advance. > > Laurent > > [0] > https://urldefense.proofpoint.com/v2/url?u=https-3A__travis-2Dci.org_lgatto_Features_jobs_538412208&d=DwIF-g&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=UAmM0hNRENFU1Y4T29z5hJJHFLKXbyWj2W8KtGaqZEE&s=GPakdUkHa8x0dEHAyNi_W5Qup4XJjADUPM2Dk_bdmN4&e= > [1] > https://urldefense.proofpoint.com/v2/url?u=https-3A__travis-2Dci.community_t_error-2Dbioconductor-2Dversion-2Dnot-2Dchanged_3491&d=DwIF-g&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=UAmM0hNRENFU1Y4T29z5hJJHFLKXbyWj2W8KtGaqZEE&s=MN6IdiDrYMIta6JGJlEJ19qaks1n9GKa4h6zMsFtwhQ&e= > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwIF-g&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=UAmM0hNRENFU1Y4T29z5hJJHFLKXbyWj2W8KtGaqZEE&s=nYwhpdHm_ENLuhTqIli7MtPUPdf8EKlcLuXvxqiI_sE&e= > -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319 _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel