Hi I had the following error while checking the package https://github.com/xyang2uchicago/BioTIP
> base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: getCluster_methods > ### Title: Clustering Network Nodes > ### Aliases: getCluster_methods > > ### ** Examples > > test = list('state1' = matrix(sample(1:10,6),3,3),'state2' = + matrix(sample(1:10,6),3,3),'state3' = matrix(sample(1:10,6),3,3)) > #assign colnames and rownames to the matrix > > for(i in names(test)){ + colnames(test[[i]]) = 1:3 + row.names(test[[i]]) = 1:3} > > #using 'rw' or 'natural' method > igraphL <- getNetwork(test, fdr=1) [1] "state1:3 nodes" [1] "state2:3 nodes" [1] "state3:3 nodes" > #[1] "state1:3 nodes" > #[1] "state2:3 nodes" > #[1] "state3:3 nodes" > > cl <- getCluster_methods(igraphL) > > #using 'km', 'pam' or 'hcm' > cl <- getCluster_methods(test, method = 'pam', cutoff=2) Error in .get_entry_index(name, stop_if_missing) : Entry TSDistances not in registry. Calls: getCluster_methods ... TSDatabaseDistances -> dist -> <Anonymous> -> f -> .get_entry_index Execution halted It seems the problem is because the required library 'TSdist' not load successfully. However, import(TSdist) is written in both DESCRIPTION and NAMESPACE. Zhezhen [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel