I am able to reproduce the ERROR. It seems to be an issue of trying to subset.
> head(exp %>% gather(Tissue)) Tissue value 1 Adipose Tissue 1.63226821549951 2 Adipose Tissue 0 3 Adipose Tissue 0 4 Adipose Tissue 0.485426827170242 5 Adipose Tissue 0.584962500721156 6 Adipose Tissue 3.05311133645956 > head(exp %>% gather(Tissue=1:(ncol(exp)-1))) Error: 1 components of `...` had unexpected names. We detected these problematic arguments: * `Tissue` Did you misspecify an argument? Call `rlang::last_error()` to see a backtrace > You can see if there were any recent changes to package you depend on that could have caused this. A package you depend on may have changed their functionality. I needed to update packages (with BiocManager::install() update all ) in order to reproduce. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Ashish Jain <j...@iastate.edu> Sent: Monday, September 16, 2019 3:08 PM To: bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: [Bioc-devel] Fwd: TissueEnrich problems reported in the Multiple platform build/check report for BioC 3.9 Hi All, I just got the message that my package is giving an error during the build process on Bioconductor build server. I saw the logs and found it is failing while building the vignette. I am not sure why it's happening as I have not updated the package since release and it was building without any errors. Can someone look into this? Regards, Ashish Jain ---------- Forwarded message --------- From: <bbs-nore...@bioconductor.org> Date: Mon, Sep 16, 2019 at 1:59 PM Subject: TissueEnrich problems reported in the Multiple platform build/check report for BioC 3.9 To: <j...@iastate.edu> [This is an automatically generated email. Please don't reply.] Hi TissueEnrich maintainer, According to the Multiple platform build/check report for BioC 3.9, the TissueEnrich package has the following problem(s): o ERROR for 'R CMD build' on malbec2. See the details here: https://master.bioconductor.org/checkResults/3.9/bioc-LATEST/TissueEnrich/malbec2-buildsrc.html Please take the time to address this by committing and pushing changes to your package at git.bioconductor.org Notes: * This was the status of your package at the time this email was sent to you. Given that the online report is updated daily (in normal conditions) you could see something different when you visit the URL(s) above, especially if you do so several days after you received this email. * It is possible that the problems reported in this report are false positives, either because another package (from CRAN or Bioconductor) breaks your package (if yours depends on it) or because of a Build System problem. If this is the case, then you can ignore this email. * Please check the report again 24h after you've committed your changes to the package and make sure that all the problems have gone. * If you have questions about this report or need help with the maintenance of your package, please use the Bioc-devel mailing list: https://bioconductor.org/help/mailing-list/ (all package maintainers are requested to subscribe to this list) For immediate notification of package build status, please subscribe to your package's RSS feed. Information is at: https://bioconductor.org/developers/rss-feeds/ Thanks for contributing to the Bioconductor project! -- Regards, Ashish Jain Ph.D. Candidate Bioinformatics and Computational Biology Iowa State University Ph +1-317-529-7973 Website: *https://ashishjain1988.github.io <https://ashishjain1988.github.io/>/* [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel