Are you using the clang 6 (R 3.5) / 7 (R 3.6) / 8 (R 4.0) which Simon supplies?
This is for clang 6 with full path /usr/local/clang6/bin/clang --version clang version 6.0.0 (tags/RELEASE_600/final) Target: x86_64-apple-darwin18.7.0 Thread model: posix InstalledDir: /usr/local/clang6/bin On Wed, Dec 4, 2019 at 11:03 AM Vincent Carey <st...@channing.harvard.edu> wrote: > When installing packages from source, > > I frequently run into this error with > > > %vjcair> clang --version > > Apple LLVM version 9.0.0 (clang-900.0.39.2) > > Target: x86_64-apple-darwin16.7.0 > > Thread model: posix > > InstalledDir: > > /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin > > > I am still running macos Sierra ... is there a solution within this > platform? I have been getting around this by modifying Makevars when > needed > > > > * installing *source* package ‘sitmo’ ... > > ** package ‘sitmo’ successfully unpacked and MD5 sums checked > > ** using staged installation > > ** libs > > clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG > -I../inst/include/ > > -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' > -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk > -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o > RcppExports.o > > clang: *error: *unsupported option '-fopenmp' > > make: *** [RcppExports.o] Error 1 > > ERROR: compilation failed for package ‘sitmo’ > > -- > The information in this e-mail is intended only for th...{{dropped:15}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel