Dear all, Assume we have a SummarizedExperiment object `se` that contains raw count data, and a method `doProcess` that processes the data to produce a matrix of identical dimensions (for example log-transformation, normalisation, imputation, ...). What are the opinions in favour or against the following two options
- `doProcess(se)` returns a new SE object - `doProcess(se)` adds a new assay to se If you are interested about the broader context about this question, see https://github.com/waldronlab/MultiAssayExperiment/issues/266 Thank you in advance for your input. Laurent _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
