Hi H, Thank you for the additional information.
I have pushed the git updates using tempdir() instead of getwd(). It sounds like that will probably fix the problem, and I will check tomorrow. Best Wishes, Charles -----Original Message----- From: Hervé Pagès <hpa...@fredhutch.org> Sent: Thursday, April 23, 2020 12:23 PM To: Charles Warden <cwar...@coh.org>; Shepherd, Lori <lori.sheph...@roswellpark.org>; 'bioc-devel@r-project.org' <bioc-devel@r-project.org> Subject: Re: [Bioc-devel] Windows Development Build Error Message for COHCAP [Attention: This email came from an external source. Do not open attachments or click on links from unknown senders or unexpected emails.] ---------------------------------------------------------------------- Hi Charles, On 4/23/20 10:19, Charles Warden wrote: > My guess was that creating the temporary file in the working directory > instead of another folder might help. FWIW here are 2 important reasons for writing temporary stuff to tempdir() instead of the current working directory: 1. tempdir() is the only place that is guaranteed to be writable on every system. Yes the user home is very likely to be writable too but there is actually no guarantee and some systems have unconventional setups where it's not. 2. Whatever you put in tempdir() will automatically be removed at the end of the R session. Even though there are ways to achieve this with the temporary stuff you write in the user home, it's not automatic and hard to get right. Cheers, H. -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319 ---------------------------------------------------------------------- ------------------------------------------------------------ -SECURITY/CONFIDENTIALITY WARNING- This message and any attachments are intended solely for the individual or entity to which they are addressed. This communication may contain information that is privileged, confidential, or exempt from disclosure under applicable law (e.g., personal health information, research data, financial information). Because this e-mail has been sent without encryption, individuals other than the intended recipient may be able to view the information, forward it to others or tamper with the information without the knowledge or consent of the sender. If you are not the intended recipient, or the employee or person responsible for delivering the message to the intended recipient, any dissemination, distribution or copying of the communication is strictly prohibited. If you received the communication in error, please notify the sender immediately by replying to this message and deleting the message and any accompanying files from your system. If, due to the security risks, you do not wish to receive further communications via e-mail, please reply to this message and inform the sender that you do not wish to receive further e-mail from the sender. (LCP301) ------------------------------------------------------------ _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
