Hi Nitesh,
I am accessing this from my home in Sydney Australia. I could probably try to
remote access my university computer tomorrow (the University of Sydney).
Best wishes,
Yingxin
On 5/5/20, 11:47 pm, "Nitesh Turaga" <nturaga.b...@gmail.com> wrote:
I'm wondering if you are trying to connect from a IP address which is
blocked by our server or your institutional/home firewall.
Do you mind telling me where you are trying to access this from?
Nitesh
> On May 4, 2020, at 9:49 PM, Yingxin Lin <yingxin....@sydney.edu.au> wrote:
>
> Hi,
>
> Thank you for your suggestion! However it still doesn’t work (same error).
>
> Best regards,
> Yingxin
>
> From: "Chengyang.Ji12" <chengyang.j...@alumni.xjtlu.edu.cn>
> Date: Tuesday, 5 May 2020 at 11:44 am
> To: Yingxin Lin <yingxin....@sydney.edu.au>, Nitesh Turaga
<nturaga.b...@gmail.com>, "bioc-devel@r-project.org" <bioc-devel@r-project.org>
> Subject: RE: [Bioc-devel] Could not read from remote repository
>
> Try ‘git remote set-url upstream
g...@git.bioconductor.org:packages/scClassify.git’
>
> Sent from Mail for Windows 10
>
> From: Yingxin Lin
> Sent: 05 May 2020 08:17
> To: Nitesh Turaga; bioc-devel@r-project.org
> Subject: Re: [Bioc-devel] Could not read from remote repository
>
> Hi Nitesh,
>
> I have created another ssh key. But the same error still comes up. Are
there any other way I could fix the problem. Thank you!
>
> Best regards,
> Yingxin
>
> On 5/5/20, 1:20 am, "Nitesh Turaga" <nturaga.b...@gmail.com> wrote:
>
> Hi,
>
> Everything looks fine. It's very unusual to see that you are getting
RW permissions shown from `ssh -T` and you are not able to access your package.
>
> It could be a firewall / transient issue with your internet. But,
just for the sake of it could you try adding another SSH key to your
BiocCredentials account and then trying once again.
>
> Best,
>
> Nitesh
>
> On 5/4/20, 11:17 AM, "Yingxin Lin" <yingxin....@sydney.edu.au> wrote:
>
> Dear Nitesh,
>
> Thank you very much for the reply. I have attached my current
config file and git remote screenshots. Hope this would help you to target the
issues.
>
> Best regards,
> Yingxin
>
>
> On 5/5/20, 1:11 am, "Nitesh Turaga" <nturaga.b...@gmail.com>
wrote:
>
> You must be using the wrong SSH key most likely.
>
> If you have R W access it means the key exists but when you
try to "fetch" via git, it's using the wrong key. You can set up your config
file if you identify which SSH key is correct.
>
> Your git remote is malformed(formatting), if you resend it to
me, I can take a better look at it.
>
> Best,
>
> Nitesh
>
> On 5/3/20, 10:37 PM, "Bioc-devel on behalf of Yingxin Lin"
<bioc-devel-boun...@r-project.org on behalf of yingxin....@sydney.edu.au> wrote:
>
> Hi,
>
> I am trying to follow the guideline to sync the existing
repositories of my package scClassify, but I got the following error:
>
>
> (base) 192-168-1-112:scClassify yingxinlin$ git fetch
--all
> Fetching origin
> From
https://protect-au.mimecast.com/s/KFlOCROND2uoxgLjh94fIZ?domain=github.com
> * branch master -> FETCH_HEAD
> Fetching upstream
> FATAL: invalid repo name: 'packages/scClassify.git' -X -C
-oForwardX11Timeout=596h -oXauthLocation=/opt/X11/bin/xauth -p 12022 localhost'
> fatal: Could not read from remote repository.
>
> Please make sure you have the correct access rights
> and the repository exists.
> error: Could not fetch upstream
>
> And I have checked ssh -T
g...@git.bioconductor.org<mailto:g...@git.bioconductor.org>, which indicates
that I have R and W access for scClassify. The “~/.ssh/config” file is set as
point 15 mentioned in
https://protect-au.mimecast.com/s/2uytCVARKgCmYPANczi9Vw?domain=bioconductor.org.
>
> Below is my remote setting:
> (base) 192-168-1-112:scClassify yingxinlin$ git remote -v
> origin
https://protect-au.mimecast.com/s/cl6pCWLVXkUZVyBRhKT2GS?domain=github.com
(fetch)
> origin
https://protect-au.mimecast.com/s/cl6pCWLVXkUZVyBRhKT2GS?domain=github.com
(push)
> upstream
g...@git.bioconductor.org<mailto:g...@git.bioconductor.org>:packages/scClassify.git
(fetch)
> upstream
g...@git.bioconductor.org<mailto:g...@git.bioconductor.org>:packages/scClassify.git
(push)
>
>
> I am wondering if you could provide some suggestions on
how I can resolve these issues. Thank you in advance!
>
> Best regards,
> Yingxin Lin
>
>
>
> [[alternative HTML version deleted]]
>
> _______________________________________________
> Bioc-devel@r-project.org mailing list
>
https://protect-au.mimecast.com/s/4YHsCXLW2mUjWMYVUk8w3X?domain=stat.ethz.ch
>
>
>
>
> _______________________________________________
> Bioc-devel@r-project.org mailing list
>
https://protect-au.mimecast.com/s/4YHsCXLW2mUjWMYVUk8w3X?domain=stat.ethz.ch
_______________________________________________
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
