Thanks Nitesh! Very much appreciated. I was wondering, is there a way to inspect the version from _within_ the image, i.e., that could supplement a sessionInfo() command?
On Mon, Aug 3, 2020 at 6:30 PM Turaga, Nitesh <nitesh.tur...@roswellpark.org> wrote: > Hello Bioconductor Community, > > A quick update about the latest developments on the Bioconductor Docker > images. > > We have updated the ‘devel’ image to inherit from the latest > ‘rocker/rstudio:4.0.2’ image. This means that the > `bioconductor/Bioconductor_docker:devel` image, which is now available will > be running on, > > > 1. Ubuntu 20.04 > 2. R version 4.0.2 > 3. Bioconductor version 3.12. > > One major update to the system requirements was the installation of the > ‘libglpk-dev’ which seemed to have caused issues installing the ‘igraph’ > package. The version number of this image which can be queried through the > docker command is going to be 3.12.13. > > If you pull the updates from dockerhub using, > > docker pull bioconductor/Bioconductor_docker:devel > > And check the version number using, (the result is going to be 3.12.13. > > docker inspect --format '{{ index .Config.Labels.version}}' > bioconductor/bioconductor_docker:devel > > > NOTE: The release image stayed exactly the same but with the addition of > the `libglpk-dev` package. The RELEASE_3_11 image did not get updated to > Ubuntu 20.04. It is still based on Ubuntu 18.04. The devel image now works > on a different version of Ubuntu (20.04) as compared to the build system > (18.04. The support for the 18.04 image on rocker is no longer available. > > The inspect label command for RELEASE_3_11 (given below) should produce > the new version number 3.11.11. Do not forget to pull. This is a bug fix > with regards to the igraph package’s missing dependency. > > docker inspect --format '{{ index .Config.Labels.version}}' > bioconductor/bioconductor_docker:RELEASE_3_11 > > > If you have any further questions, please reply to this thread. > > Best regards, > > Nitesh Turaga > Bioconductor Core Team > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- Levi Waldron Associate Professor Department of Epidemiology and Biostatistics CUNY Graduate School of Public Health and Health Policy Institute for Implementation Science in Population Health 55 W 125th St, New York NY 10035 https://waldronlab.io [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel