Hello, My name is Bruno Pereira and i�m from Portugal. I am developing na R package that serves as a repository of datasets for another package. One of the datasets has an S4 object of class xcmsSet which means i need to add to my description file xcms. However when i try to check or even submit this package to Cran, i get a couple of warnings due to mzR and Rcpp versions, not allowing the package to be accepted.
The output of the warnings is: Warning in fun(libname, pkgname) : mzR has been built against a different Rcpp version (1.0.4.6) than is installed on your system (1.0.5). This might lead to errors when loading mzR. If you encounter such issues, please send a report, including the output of sessionInfo() to the Bioc support forum at https://support.bioconductor.org/ . For details see also https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue. My sessionInfo() is: R version 4.0.2 (2020-06-22) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19041) Matrix products: default locale: [1] LC_COLLATE=Portuguese_Portugal.1252 LC_CTYPE=Portuguese_Portugal.1252 [3] LC_MONETARY=Portuguese_Portugal.1252 LC_NUMERIC=C [5] LC_TIME=Portuguese_Portugal.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] specmine.datasets_0.0.1 devtools_2.3.2 usethis_1.6.3 loaded via a namespace (and not attached): [1] ProtGenerics_1.20.0 bitops_1.0-6 matrixStats_0.57.0 [4] fs_1.5.0 doParallel_1.0.16 RColorBrewer_1.1-2 [7] rprojroot_2.0.2 GenomeInfoDb_1.24.2 MSnbase_2.14.2 [10] tools_4.0.2 affyio_1.58.0 R6_2.5.0 [13] BiocGenerics_0.34.0 colorspace_2.0-0 withr_2.3.0 [16] tidyselect_1.1.0 prettyunits_1.1.1 processx_3.4.4 [19] compiler_4.0.2 MassSpecWavelet_1.54.0 preprocessCore_1.50.0 [22] cli_2.1.0 Biobase_2.48.0 xml2_1.3.2 [25] desc_1.2.0 DelayedArray_0.14.1 scales_1.1.1 [28] DEoptimR_1.0-8 robustbase_0.93-6 affy_1.66.0 [31] callr_3.5.1 stringr_1.4.0 digest_0.6.27 [34] XVector_0.28.0 pkgconfig_2.0.3 sessioninfo_1.1.1 [37] limma_3.44.3 rlang_0.4.8 rstudioapi_0.13 [40] impute_1.62.0 generics_0.1.0 mzID_1.26.0 [43] BiocParallel_1.22.0 dplyr_1.0.2 RCurl_1.98-1.2 [46] magrittr_1.5 GenomeInfoDbData_1.2.3 MALDIquant_1.19.3 [49] Matrix_1.2-18 Rcpp_1.0.5 munsell_0.5.0 [52] S4Vectors_0.26.1 fansi_0.4.1 lifecycle_0.2.0 [55] vsn_3.56.0 stringi_1.5.3 MASS_7.3-53 [58] SummarizedExperiment_1.18.2 zlibbioc_1.34.0 pkgbuild_1.1.0 [61] plyr_1.8.6 grid_4.0.2 parallel_4.0.2 [64] crayon_1.3.4 lattice_0.20-41 mzR_2.22.0 [67] xcms_3.10.2 knitr_1.30 ps_1.4.0 [70] pillar_1.4.6 GenomicRanges_1.40.0 codetools_0.2-18 [73] stats4_4.0.2 pkgload_1.1.0 XML_3.99-0.5 [76] glue_1.4.2 pcaMethods_1.80.0 remotes_2.2.0 [79] BiocManager_1.30.10 foreach_1.5.1 vctrs_0.3.5 [82] testthat_3.0.0 gtable_0.3.0 RANN_2.6.1 [85] purrr_0.3.4 assertthat_0.2.1 ggplot2_3.3.2 [88] xfun_0.19 roxygen2_7.1.1 ncdf4_1.17 [91] tibble_3.0.4 iterators_1.0.13 memoise_1.1.0 [94] IRanges_2.22.2 ellipsis_0.3.1 Best regards, Bruno Pereira. [[alternative HTML version deleted]]
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