>From a Bioconductor R perspective, we can't tell if the package would work >with a lesser version of R or lower versions of any package dependencies. We >accept packages and have requirements to ensure packages can run. You can always have another github branch....
I believe in the past we tried suggesting removing a R dependency altogether but that R CMD check complained not having an R dependency? Maybe someone remembers more about this. Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Kasper Daniel Hansen <kasperdanielhan...@gmail.com> Sent: Thursday, April 8, 2021 1:33 PM To: Kern, Lori <lori.sheph...@roswellpark.org> Cc: bioc-devel <bioc-devel@r-project.org> Subject: Re: [Bioc-devel] BiocCheck and version requirement But why is it even a warning? The submission policy is that warnings are discouraged. This means that developers will adapt to this warning. The check is also against the policies on the website which state you don't need a formal dependency. Best, Kasper On Thu, Apr 8, 2021 at 3:53 PM Kern, Lori <lori.sheph...@roswellpark.org<mailto:lori.sheph...@roswellpark.org>> wrote: This requirement has been around for awhile. New package submissions are checked against the devel version of Bioconductor. At the moment this is R devel (R 4.1) and Bioconductor packages in devel for 3.13. Given that Bioconductor releases are closely tied to a R release, and changes in R can (and have) had great consequences for package functionality, we can not guarantee a package will work on any previous version of R or with previous versions of packages. It is why it is a warning and not an error Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org<mailto:bioc-devel-boun...@r-project.org>> on behalf of Kasper Daniel Hansen <kasperdanielhan...@gmail.com<mailto:kasperdanielhan...@gmail.com>> Sent: Thursday, April 8, 2021 9:44 AM To: bioc-devel <bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>> Subject: [Bioc-devel] BiocCheck and version requirement The latest BiocCheck (well, it may have been around for a bit) _requires_ the package to have a R >= 4.1 dependency. That seems new to me. Right now it's a bit irritating, because if you're submitting a package that works with latest stable release, you are now prohibited from installing it from Github into your stable Bioc version. Traditionally, we have not enforced this I think, even though we all know of the implicit dependency. -- Best, Kasper [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://secure-web.cisco.com/1Zqtuoo0O2aKBea_yHofM_QCv72B3JNIupD47xAVitntUD9FgXVvT4yX66u57RWFhMonvou61R_vk6u1LgIM5J8qpHXw4gXWyAxGlZFJEH--5tT-UESMe6_L4bbB6jIcOfYl0J5FI0gucNH0boaxPdv4-It-V5j3TPd2bd5Er3K7MHNVFhqgA5bs84nYYGnvBuOVns86_d2q_mkKzVTHay7GQUxlJhDGVxQbxlwyKvaVPNraVZJKI3lQzwTpavNpm7CpFuIOaDv9a9-euSOlKn3NYMdkPxNfAHv3u2sI1vZ_1ww4KU4c5TgGsp-ard5Ix/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. -- Best, Kasper This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
