Dear Dr Diaz: This email list is for development of software in Bioconductor. Questions about basic functionality should go to support.bioconductor.org -- please visit that site and make an account.
For your specific question please note the message > source("https://bioconductor.org/biocLite.R") Error: With R version 3.5 or greater, install Bioconductor packages using BiocManager; see https://bioconductor.org/install biocLite is not used with the version of R you are using. If you have further questions please post to support.bioconductor.org. Thanks! On Fri, Apr 16, 2021 at 6:30 AM Diaz, Josue E. <diaz....@buckeyemail.osu.edu> wrote: > > BiocManager::install("biocLite")Bioconductor version 3.12 (BiocManager > 1.30.12), R 4.0.4 (2021-02-15)Installing package(s) 'biocLite'Installation > path not writeable, unable to update packages: broom, callr, cli, cpp11, > dbplyr, diffobj, pkgload, processx, reprex, survival, tinytex, > vctrsWarning message:package ‘biocLite’ is not available for this version > of RA version of this package for your version of R might be available > elsewhere,see the ideas athttps:// > cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages > > > source("https://bioconductor.org/biocLite.R") > Error: With R version 3.5 or greater, install Bioconductor packages using > BiocManager; see https://bioconductor.org/install > > biocLite(pkgs=c("Biobase", "IRanges", "AnnotationDbi"), > suppressUpdates=FALSE, suppressAutoUpdate=FALSE, siteRepos=character(), > ask=TRUE, ...)Error in biocLite(pkgs = c("Biobase", "IRanges", > "AnnotationDbi"), suppressUpdates = FALSE, : could not find function > "biocLite" > > > BiocManager::install()Bioconductor version > 3.12 (BiocManager 1.30.12), R 4.0.4 (2021-02-15)Installation path not > writeable, unable to update packages: broom, callr, cli, cpp11, dbplyr, > diffobj, pkgload, processx, reprex, survival, tinytex, vctrs > > BiocManager::install()Bioconductor > version 3.12 (BiocManager 1.30.12), R 4.0.4 (2021-02-15)Installation path > not writeable, unable to update packages: broom, callr, cli, cpp11, > dbplyr, diffobj, pkgload, processx, reprex, survival, tinytex, vctrs > > Josue Diaz > Graduate Research Fellow | Dr. Leah McHale Lab > Center for Applied Plant SciencesTranslational Plant Sciences Graduate > Program > > 326 Kottman Hall, 2021 Coffey Road, Columbus, OH 43212 > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- The information in this e-mail is intended only for the ...{{dropped:18}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel