Hi all,
I am looking for the 1000genomes Phase3 Reference Genome Sequence (equivalent
to the Phase 2 version would be useful: BSgenome.Hsapiens.1000genomes.hs37d5
https://bioconductor.org/packages/release/data/annotation/html/BSgenome.Hsapiens.1000genomes.hs37d5.html).
The dataset I'm looking for is also found here for download:
https://ctg.cncr.nl/software/MAGMA/ref_data/g1000_eur.zip
Is this available in Bioconductor? I want to use it in a package I'm
developing. I know I could download it through the package when needed or store
the dataset in as package data but I know neither of these solutions are not
good practice for Bioconductor submission.
Kind regards,
Alan.
Alan Murphy
Bioinformatician
Neurogenomics lab
UK Dementia Research Institute
Imperial College London
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