IlluminaHumanMethylation450kanno.ilmn12.hg19 is primarily a collection of data.frames isn't it? I notice that the Illum...anno... package itself depends on minfi, which seems unnecessary. But perhaps Kasper will comment.
On Fri, May 21, 2021 at 5:32 AM xin wwa <whirl...@gmail.com> wrote: > Dear Bioconductor team, > > Hi, thank you for reading my email. > > Our package has too many dependencies. > Therefore, we may want to reduce dependencies. > The main reason is that we use > minfi::getAnnotation("IlluminaHumanMethylation450kanno.ilmn12.hg19"). And > minfi package we used has lots of dependencies. > This is only an annotation table that contains some probe information. > Is there a way to load the annotation file independent of minfi package? > > Thanks in advance. Any help is appreciated! > > Regards, > > Xin Yu > Ph.D. student of Biomedical Informatics > College of Bioinformatics - Huazhong Agricultural University > whirl...@gmail.com > yu...@webmail.hzau.edu.cn > tel: (+86) 186-5313-5769 > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- The information in this e-mail is intended only for the ...{{dropped:18}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel