Good day, I apparently have a valid Bioconductor package library but VariantAnnotation won't install successfully.
> valid() [1] TRUE > install("VariantAnnotation") Bioconductor version 3.13 (BiocManager 1.30.15), R 4.1.0 (2021-05-18) Installing package(s) 'VariantAnnotation' trying URL 'https://bioconductor.org/packages/3.13/bioc/src/contrib/VariantAnnotation_1.38.0.tar.gz' Content type 'application/x-gzip' length 1726088 bytes (1.6 MB) ================================================== downloaded 1.6 MB NULL * installing *source* package ‘VariantAnnotation’ ... ** using staged installation ** libs gcc -I"/verona/biostat/software/R-4.1.0/include" -DNDEBUG NULL -D_FILE_OFFSET_BITS=64 -I'/dskh/biostat/software/R-4.1.0/library/S4Vectors/include' -I'/dskh/biostat/software/R-4.1.0/library/IRanges/include' -I'/dskh/biostat/software/R-4.1.0/library/XVector/include' -I'/dskh/biostat/software/R-4.1.0/library/Biostrings/include' -I'/dskh/biostat/software/R-4.1.0/library/Rhtslib/include' -I/usr/local/include -fpic -g -O2 -c Biostrings_stubs.c -o Biostrings_stubs.o gcc: error: NULL: No such file or directory make: *** [/verona/biostat/software/R-4.1.0/etc/Makeconf:168: Biostrings_stubs.o] Error 1 ERROR: compilation failed for package ‘VariantAnnotation’ > sessionInfo() R version 4.1.0 (2021-05-18) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Debian GNU/Linux 10 (buster) BLAS: /dskh/biostat/software/R-4.1.0/lib/libRblas.so LAPACK: /dskh/biostat/software/R-4.1.0/lib/libRlapack.so -------------------------------------- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel