Salut Pierrick,
Please give it one more week. We updated R to 4.1.2 on the release build
machines last week and riesling1 was the last one to receive the update.
For riesling1 this update was actually made only a few hours before the
Long Tests builds, with the unfortunate consequence that not all deps
got a chance to get installed on the machine before those builds started.
This is just bad timing and I'm sorry for the inconvenience.
Cheers,
H.
On 14/11/2021 23:03, Pierrick Roger wrote:
Hi,
The long tests of all my packages (biodb, biodbChebi, biodbHmdb,
BiodbKegg, biodbLipidmaps, biodbUniprot) are failing on Windows platform
(riesling1).
Here is the error for `biodb`:
```
* checking package dependencies ... ERROR
Packages required but not available:
'BiocFileCache', 'R6', 'RSQLite', 'Rcpp', 'XML', 'chk', 'jsonlite',
'lgr', 'lifecycle', 'openssl', 'plyr', 'progress', 'rappdirs',
'stringr', 'withr', 'yaml', 'testthat'
Packages suggested but not available:
'BiocStyle', 'roxygen2', 'devtools', 'knitr', 'rmarkdown', 'covr',
'xml2', 'git2r'
```
See the following pages:
* http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodb/
*
http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodbHmdb/
*
http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodbChebi/
*
http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodbKegg/
*
http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodbUniprot/
*
http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodbLipidmaps/
Does anyone have an idea of what is happening?
--
Hervé Pagès
Bioconductor Core Team
hpages.on.git...@gmail.com
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