On 12/12/2021 03:49, Philipp A. wrote:
I think the easiest fix was to just switch to HTML vignettes, then destiny
is no longer dependent on Bioconductor’s LaTeX environment staying stable.
Let’s see in the next build if it worked.
Just in case someone is watching this thread and wondering what we're
doing with the LaTeX environment on the build machines.
Short answer: nothing
Detailed answer:
- The Linux builders run Ubuntu 20.04 LTS which provides Tex Live. See
https://github.com/Bioconductor/BBS/blob/master/Ubuntu-files/20.04/apt_vignettes_reference_manuals.txt
for the exact list of Deb packages we install on the builders. That's
all we install there as far as TeX/LaTeX is concerned.
- The Windows builders use MiKTeX. We install MiKTeX once for all when
we prepare a new Windows machine for the builds and that's it. We never
touch it again.
- The Mac builders use MacTeX which we also install once for all at prep
time.
All these installations are stock installations. We don't "tweak" them
or try to define specific variable environments to change the default
behavior. They just work out-of-the box like they would on the end-user
machines.
Just wanted to clarify.
Cheers,
H.
If not, I’d like some support. The 24 hour turnaround of the build bots is
too slow for incremental changes.
Am Fr., 10. Dez. 2021 um 18:59 Uhr schrieb Vincent Carey <
st...@channing.harvard.edu>:
How are we doing with this? Can destiny be maintained? Do we need more
git assistance?
I am told the package is not passing check in 3.14.
On Thu, Nov 18, 2021 at 4:24 AM Philipp A. <flying-sh...@web.de> wrote:
My addresses are phil.ange...@gmail.com (not philipp) and
flying-sh...@web.de.
I’ll add a key as soon as I’m able to log in.
Am Mo., 15. Nov. 2021 um 15:56 Uhr schrieb Nitesh Turaga <
nturaga.b...@gmail.com>:
You have to activate the account at
https://git.bioconductor.org/BiocCredentials/account_activation. Set a
password and add Ssh keys.
Once again, the email you are trying to activate is '
philipp.ange...@gmail.com’.
The problem seems to be non-matching key pairs. Add new SSH keys.
Best,
Nitesh
Nitesh Turaga
Scientist II, Department of Data Science,
Bioconductor Core Team Member
Dana Farber Cancer Institute
On Nov 15, 2021, at 9:54 AM, Nitesh Turaga <nturaga.b...@gmail.com>
wrote:
Hi Philipp,
The email address that is registered to BiocCredentials right now is '
philipp.ange...@gmail.com'. It doesn’t look like an institutional email
address.
Could you please confirm the email change to flying-sh...@web.de ??
Best,
Nitesh
Nitesh Turaga
Scientist II, Department of Data Science,
Bioconductor Core Team Member
Dana Farber Cancer Institute
On Nov 15, 2021, at 2:36 AM, Carsten Marr <
carsten.m...@helmholtz-muenchen.de> wrote:
confirmed!
best,
c
Am 13.11.2021 um 15:56 schrieb Philipp A. <flying-sh...@web.de>:
I no longer have control of this email address.
Please add the one I’m writing from to the account.
My supervisor (CC) from when I was at the institution can confirm
that
I’m the same person.
Best, Phil
Am Di., 9. Nov. 2021 um 16:24 Uhr schrieb Nitesh Turaga <
nturaga.b...@gmail.com>:
Dear Phil,
Please activate your account at
https://git.bioconductor.org/BiocCredentials/account_activation. Add
new
SSH keys, because it’s possible you are not using the correct key-pairs.
Nothing on our end seems out of place.
The FAQ section from #13 onwards has other debugging options as
well,
https://bioconductor.org/developers/how-to/git/faq/.
Best,
Nitesh
Nitesh Turaga
Scientist II, Department of Data Science,
Bioconductor Core Team Member
Dana Farber Cancer Institute
On Nov 8, 2021, at 12:23 PM, Philipp A. <flying-sh...@web.de>
wrote:
Hi,
My package (destiny) has been deprecated because Bioconductor’s
LaTeX
environment keeps changing and breaking my docs.
I‘m trying to fix it once again, but I get:
$ git push upstream masterFATAL: W any packages/destiny p.angerer
DENIED by fallthru
*Please note that this isn’t covered in the FAQ*:
“p.angerer” indicates that it recognizes me, but still doesn’t
allow
me to
push commits.
Best, Phil
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