Thanks, Hervé for your reply.
Now, this error has been fixed (
http://bioconductor.org/checkResults/3.16/bioc-LATEST/miRspongeR/).
According to your suggestion, I have just imported the functions used in
miRspongeR from SPONGE. In addition, I have removed the line
'library(SPONGE)' in vignettes.
If possible, I will fork a part of functions in SPONGE instead of importing
it.
Regards,
Junpeng.
Hervé Pagès <hpages.on.git...@gmail.com> 于2022年9月24日周六 03:00写道：
> On 21/09/2022 07:57, Hervé Pagès wrote:
>
> > Just a workaround and not a real solution but maybe try to switch the
> > order of the clusterProfiler and SPONGE reports?
> >
> Oops, I meant "imports", not "reports".
>
> But, again, reducing the huge number of dependencies of both miRspongeR
> and SPONGE should be a priority. Something that you might want to
> discuss/coordinate with the SPONGE folks.
>
> Best,
>
> H.
>
> --
> Hervé Pagès
>
> Bioconductor Core Team
> hpages.on.git...@gmail.com
>
>
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