Hi bioc team, My package seqArchR though does not error in any way, but can spit out numerous warnings (originally from Python/scikit-learn which is a dependency) depending on the version of scikit-learn available. This fills the output to the extent that it is unreadable. The cause for this is the deprecation/future version warning in NMF/scikitlearn <https://scikit-learn.org/stable/modules/generated/sklearn.decomposition.NMF.html> which is forced, so I cannot suppress it.
I pushed a fix for this in the devel version -- where, instead of increasing the dependency version, I check the module version using packaging module from setuptools and appropriately make the python function call. But this gives an error on the Windows build machine, and is fine on Linux/macOS. See https://bioconductor.org/checkResults/3.16/bioc-LATEST/seqArchR/palomino4-checksrc.html I expected that setuptools will be available on all machines, because the previous alternative, distutils, is available with vanilla python, but is not recommended. Would you suggest having setuptools in the SystemRequirements or using distutils? Or simply depending on higher version of scikit-learn (the latest 1.2) -- which is the root cause of this issue anyway. Thanks and best, Sarvesh -- thanks! -Sarvesh [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
