Hi all, I am trying to resolve an issue with dependencies of my package which is under review at the moment (Issue 2790 <https://github.com/Bioconductor/Contributions/issues/2790>, latest report <http://bioconductor.org/spb_reports/seqArchRplus_buildreport_20221025084934.html>). I was wondering if somebody else also encountered this issue (see details below), and were successful resolving it. Any help in this regard would be greatly appreciated.
*The issue:* Running BiocCheck throws the following error: Error in completeSubclasses(classDef2, class1, obj, where) : trying to get slot "subclasses" from an object of a basic class ("NULL") with no slots Error: .onLoad failed in loadNamespace() for 'dbplyr', details: call: setClass(cl, contains = c(prevClass, "VIRTUAL"), where = where) error: error in contained classes ("character") for class ident; class definition removed from dbplyr Execution halted which going by info at tidyverse/dbplyr#779 <https://github.com/tidyverse/dbplyr/issues/779> is caused by Brobdingnag <https://github.com/RobinHankin/Brobdingnag>, and resolved with version 1.2-9, which is now also available on CRAN (see here <https://github.com/RobinHankin/Brobdingnag/issues/24>). I saw this error earlier on my debian machine only using bioc-devel. Here, I could resolve this by re-installing Matrix, dbplyr and Brobdingnag. On bioc-side, the error can be seen on Ubuntu (latest report <http://bioconductor.org/spb_reports/seqArchRplus_buildreport_20221025084934.html>). Maybe, it would occur on other OSs as well, but that stage is not reached. Thanks to Lori and Jennifer from bioc-team, the same re-installation solution was attempted, but this did not resolve it there. Since I do not have access to a machine running Ubuntu around, I have set up GHA. There, interestingly, the same error is encountered on macOS and Windows, but not on Ubuntu -- details here <https://github.com/snikumbh/seqArchRplus/actions/runs/3322212068/jobs/5490915503> . Any leads? Thanks in advance. -- thanks! -Sarvesh [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel