Thank you Prof. MacDonald. The solution ended up being slightly different than we had anticipated, but I'm including it below should any other users have similar difficulties.
TL;DR: RStudio Terminal can't find my SSH key (despite being listed in the RStudio Global Options), but Git Bash can. Solution: push upstream via Git Bash. Long version: I use Git via the Terminal in RStudio rather than through more traditional means. As of last year, the home directory (~/) on Windows for an RStudio Terminal is different than the home directory for the rest of the computer. This issue is documented here (https://community.rstudio.com/t/git-bash-uses-different-home-directory-in-rstudio-2022-12-0-on-windows/155508), but has not yet been resolved. For me, this means that I had the correct RSA key according to Git Bash (~/ = C:/Users/godom/) and RStudio Global Options (~/ = C:/Users/godom/), but not for the RStudio Terminal which I used in my attempts to perform a git push (~/ = C:/Users/godom/Documents/, which obviously doesn't have the expected .ssh/ folder). -----Original Message----- From: Bioc-devel <bioc-devel-boun...@r-project.org> On Behalf Of James W. MacDonald Sent: Thursday, February 9, 2023 3:50 PM To: Gabriel Odom <go...@fiu.edu>; bioc-devel@r-project.org Subject: Re: [Bioc-devel] updating pathwayPCA: "permission denied (publickey)" Note: This message originated from outside the FIU Faculty/Staff email system. That looks like you have the wrong RSA key. You should be able to check which key you are using by logging in here: https://urldefense.com/v3/__https://git.bioconductor.org/BiocCredentials/login/__;!!FjuHKAHQs5udqho!LGpeGB2VKDnOCR9x6ZTjbGZGzrsTdPAf9rpYI4UGgwNWl2StQ8BMlhIRUBnu9TX2pHK5nP0VaNJhbbiRsI8$ -----Original Message----- From: Bioc-devel <bioc-devel-boun...@r-project.org> On Behalf Of Gabriel Odom Sent: Thursday, February 9, 2023 1:56 PM To: bioc-devel@r-project.org Subject: [Bioc-devel] updating pathwayPCA: "permission denied (publickey)" Dear BioC-Devel folks, My package, pathwayPCA, had an error in the vignettes which I've just fixed. It's been a few years since my last bug fix, and I don't know what I'm doing wrong. When I use "git push upstream master", I see "mailto:g...@git.bioconductor.org: Permission denied (publickey)." Using "git remote -v" shows "upstream mailto:g...@git.bioconductor.org:packages/pathwayPCA.git (push)" (and pull). Am I missing something simple? Best, Gabriel Gabriel J. Odom, PhD, ThD Assistant Professor Department of Biostatistics Stempel College of Public Health Florida International University Office: (305) 348-5486 Email: gabriel.o...@fiu.edu _______________________________________________ Bioc-devel@r-project.org mailing list https://urldefense.com/v3/__https://stat.ethz.ch/mailman/listinfo/bioc-devel__;!!K-Hz7m0Vt54!lgUqo10igxIGCi2Ltk5ROGKBk4zpJU2-R56q0s-o57z8DPMtm03l92N486lSHV_-Luj2SloQg9_4$ _______________________________________________ Bioc-devel@r-project.org mailing list https://urldefense.com/v3/__https://stat.ethz.ch/mailman/listinfo/bioc-devel__;!!FjuHKAHQs5udqho!LGpeGB2VKDnOCR9x6ZTjbGZGzrsTdPAf9rpYI4UGgwNWl2StQ8BMlhIRUBnu9TX2pHK5nP0VaNJhouP-go4$ _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
