Hi everyone, After some pushes upstream to my package orthogene<https://bioconductor.org/packages/release/bioc/html/orthogene.html>, I noticed that the release version (3.16) is failing on the server because it was �Killed� midway through. But I can�t see any details that explain why or how it was killed. http://bioconductor.org/checkResults/release/bioc-LATEST/orthogene/nebbiolo2-checksrc.html
The only thing I know is that is occurs at the step where a large tree (147k species, stored as a 5.3Mb newick file) is being read into R with ape::read.tree https://github.com/neurogenomics/orthogene/blob/4e41e6322507a929562fc77cbdc602bc084a34bf/R/prepare_tree.R#L115 Oddly, this same code seems to work fine on devel (3.17): http://bioconductor.org/packages/3.17/bioc/html/orthogene.html Anyone know why this might be? Thanks in advance, Brian ___________ Brian Schilder PhD Candidate UK Dementia Research Institute at Imperial College London Faculty of Medicine, Department of Brain Sciences, Neurogenomics Lab CV | https://bschilder.github.io/CV/CV<https://bschilder.github.io/CV/CV.html> LinkedIn | linkedin.com/in/brian-schilder<https://www.linkedin.com/in/brian-schilder/> Twitter | twitter.com/BMSchilder<http://www.twitter.com/BMSchilder> Lab | neurogenomics.co.uk<http://neurogenomics.co.uk> UK DRI | www.ukdri.ac.uk<http://www.ukdri.ac.uk/> [[alternative HTML version deleted]]
_______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
