Note the link you provided is only for mac arm 64 builds https://bioconductor.org/checkResults/3.17/bioc-mac-arm64-LATEST/
The report for linux, mac, and windows is found here: https://bioconductor.org/checkResults/3.17/bioc-LATEST/long-report.html And the main check results page shows the schedule for builds. https://bioconductor.org/checkResults/ As far as testing for if it works, most just wait. Trying a run with the correct version of R and Bioconductor and ensuring all packages are valid/up-to-date with BiocManager::valid and BiocManager::install can help too. There are Bioconductor dockers available that try to mimic the build system environment that can be beneficial too. Hope that helps a little. Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Evan Biederstedt <evan.biederst...@gmail.com> Sent: Saturday, April 15, 2023 2:41 PM To: bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: [Bioc-devel] taking over package, fixing build error Hi BioConductor devel community (Apologies if these are obvious questions; I haven't quite grokked the answers from the documentation.) I'm someone who has submitted in the past to CRAN, but this is my first rodeo with Bioconductor. Please be patient with me :) I'm taking over as a maintainer for this package: https://secure-web.cisco.com/17YjCGhDwIrU1ClZrmjvB3lSR7k0_8S5Fd3mMrD2C2Md_g8Z7MqEoWAd9XzBKkNcHgRJ2ggE32elkpbkNFbfZxNEpJUZrTv17t0sJ8t_ZW2PPwNUJXBBpnbGEsih8h4qntwMAvCv_BaZnA11MU_khCiVJubDi-nh7-M-MwCHEdRavahr7I2fwCFFAk_TksrIaR246nfDYOArvyF9Jirgbj__dycJ3ej0vlMZlUznY2x8z4RUZRo3HgfP-Td6_IJyPSYganZjwyIAiaY10l1Rnw1PRXwBGX5FGkidS7UZl00rxHPplf2meEM1L4dxyqN23/https%3A%2F%2Fbioconductor.org%2Fpackages%2Frelease%2Fbioc%2Fhtml%2Fscde.html There was an issue with the compilation of scde (related to C++17 and deprecated C++ function). https://secure-web.cisco.com/1pjgPdAGYbFi9-qIcpXg4ITO0Ra6S3p38gG2qj_wtmRTNhuzGhzIIC-m-UiVaZp3W0USgbZF-gQcK2KTgoGZtbeROAPokOogr76J3hzlaxsVmnpgJynOexIpyTOFfssnWyU6sl2_AnQlXe4TT0rUSzHJrNBWv5dgtUjOi33fe0Fw9dam8Sl5_nxRm7fbIm_8Jz7WE19HqKsjJ9w8irjOdFmRf7RQtXAgkadurHx1pIqbQnCdcrWdSK8Tf5cADC5lPjN_ZgO_9pW_sf-aC3ErYX9I9qvfxQ74mHKHVhthRLtchbXgtFnPQFd4PQYtUjEQT/https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.17%2Fbioc-mac-arm64-LATEST%2Fscde%2Fkjohnson2-checksrc.html I think I've fixed this. So I pushed changes on the `devel` branch in the repo from```git clone g...@git.bioconductor.org:packages/scde```, following the instructions here: https://secure-web.cisco.com/1hvMPwUdNJsGcO7mY8kqma_3evCgzLQTlFQgCBvpjAKgiDntWPRPz7XPewPqQ7uG9UI1X1gmLR0vXxP6zrlllIr29HbUFdDgBoxcN3A1lqMFRB5VskO7g7QKM5jbBrR2zOqtNWcjSe8B58yjn7w1989sb1_sK-qr9VcgQrS2qD7Vxs95nn8oXMTSSy6qBrupvx9zWjP1p2xKjTrHW0StnV2QL5jrFOLDn0R7zt-htw5F9i_fxfw058WUdE9krT4N9DZ_wq-oNYS7D0unHrSt3oBrni7LY_Tvt_HTkhl23fhciYt_7ivtsYs927kpOI5Ni/https%3A%2F%2Fcontributions.bioconductor.org%2Fgit-version-control.html My question is, how do BioConductor developers normally check that this works? My understanding is that one waits for 24 hours for the packages to be re-built, and then developers check the URL here: https://secure-web.cisco.com/1pjgPdAGYbFi9-qIcpXg4ITO0Ra6S3p38gG2qj_wtmRTNhuzGhzIIC-m-UiVaZp3W0USgbZF-gQcK2KTgoGZtbeROAPokOogr76J3hzlaxsVmnpgJynOexIpyTOFfssnWyU6sl2_AnQlXe4TT0rUSzHJrNBWv5dgtUjOi33fe0Fw9dam8Sl5_nxRm7fbIm_8Jz7WE19HqKsjJ9w8irjOdFmRf7RQtXAgkadurHx1pIqbQnCdcrWdSK8Tf5cADC5lPjN_ZgO_9pW_sf-aC3ErYX9I9qvfxQ74mHKHVhthRLtchbXgtFnPQFd4PQYtUjEQT/https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.17%2Fbioc-mac-arm64-LATEST%2Fscde%2Fkjohnson2-checksrc.html Is there any other way to double check that the commits fix the issue? �devtools::check_max_release()� but this often struggles with bioconductor packages Thank you for the help! Best, Evan [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://secure-web.cisco.com/1vw9O3UyR1Y940C0zKjB-tiK-baXutUvpqC50dO_ZMW9jGyZh3fM7NOTLB8S5uzYEIqLANYLZQHw5nF2BdwurussfEc3zsmUtjxWXaHuYqBJlp1LJ53f6M7z4QYxBaz_JyKYK64KWj06lg-ncs3yrpzn2ABDnHIOQd-ZdBtcuEPfkcs6PIvscw0XPlJezUO-UaObluDYVZPngy7sGFNtK2WK4NBJp0jT0jVuRcp7L1wq83lJI8TK4qqLywON-VsdKJKOxQKQLr3i5JA1s5PpIugD8FrHLc478bmpvjPQyaBBlvchquCx7wiJTQeTA9HV1/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]]
_______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
