The problem is that it is in an error state --- re-building ‘subtypes.Rmd’ using rmarkdown Quitting from lines 114-121 (subtypes.Rmd) Error: processing vignette 'subtypes.Rmd' failed with diagnostics: object 'lgg.gbm.subtype' not found --- failed re-building ‘subtypes.Rmd’
so the standard installation approach isn't working now. https://github.com/BioinformaticsFMRP/TCGAbiolinks -- file an issue In an emergency you might succeed with BiocManager::install("BioinformaticsFMRP/TCGAbiolinks") On Fri, Apr 28, 2023 at 9:07 AM Elizabeth Cattaneo < elizabethcatta...@gmail.com> wrote: > Hello! > I was trying to use TCGAbiolinks as usual in a R-Colab notebook but I got > this error: > > Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 (2023-04-21) > Installing package(s) 'TCGAbiolinks' Warning message: *“package > ‘TCGAbiolinks’ is not available for * > *Bioconductor version '3.17'* > > What should I do to fix it? > > Thanks! > > Elizabeth > > -- > Bioq. Elizabeth Cattaneo > Dra Fac. Cs. Exactas, UNLP > INIBIOLP, Fac. Cs.Médicas, UNLP > calle 60 y 120 S/N, 1900 La Plata > Argentina > Tel. +54 221 4824894 > <http://www.inibiolp.org.ar/>www.inibiolp.org.ar > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- The information in this e-mail is intended only for the ...{{dropped:18}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel