Hi, I wonder if it's because the entire "vignettes/figures" is not pushed to Bioc git (it's included in your .gitignore). And the previous chunk does not re-create the figure.
Best, Oleksii On Fri, 28 Apr 2023 at 15:24, Laurent Gatto <laurent.ga...@uclouvain.be> wrote: > I am puzzled by this error: > > The vignette fails because it can't find a figure > > * checking re-building of vignette outputs ... ERROR > Error(s) in re-building vignettes: > --- re-building ‘RProtVis.Rmd’ using rmarkdown > Quitting from lines 607-608 (RProtVis.Rmd) > Error: processing vignette 'RProtVis.Rmd' failed with diagnostics: > Cannot find the file(s): "figures/msanim1.gif" > --- failed re-building ‘RProtVis.Rmd’ > > Even though that figure does exists [1]. > > I am unable to reproduce locally and on Github [2] > > Source: [3] > > Any idea? > > Laurent > > [1] https://github.com/lgatto/RforProteomics/tree/master/vignettes/figures > [2] If fails at the moment, but for a different reason - a dependency is > not (yet?) available > [3] > https://master.bioconductor.org/checkResults/3.17/data-experiment-LATEST/RforProteomics/nebbiolo1-checksrc.html > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel