Dear Developers, I am currently in the process of submitting my package on Bioconductor and I am facing some issues during the R CMD check on the Bioconductor Build System. Since I was not able to find any answers to my doubts, I decided to ask for your help before doing anything wrong.
The build report for my package is available here: http://bioconductor.org/spb_reports/MIRit_buildreport_20231211095232.html In particular, my package includes some functions where it accesses remote resources. Therefore, I included some "skip_on_bioc()" chunks at the beginning of these tests since I don't want my package to fail during the build process because of occasional down times. However, when I look at the build report, I notice that the relevant tests are not skipped. Furthermore, other tests that should be run are instead skipped on CRAN. I am referring to these lines: Skipped tests (2) On CRAN (2): 'test-topological-integration.R:23:5', 'test-utils.R:20:5' Lastly, I have an error during R CMD check on macOS, and I really don't know how to reduce the running time on this operating system. Currently, I have reshaped the testing suite to reduce the time spent on unit tests. However, on macOS, i guess that most of the time consumed is due to examples. Nevertheless, the most time consuming functions retrieve gene-sets from external resources and I can't reduce the download size of KEGG pathways, for example. What should I do? Sorry again for bothering you, Best regards, Jacopo [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
