Dear Lori, Thanks for your prompt and helpful email. I think I've managed to make the necessary changes to stop the build error. I think it did it quite manually changing my Github, the Bioconductor dev code and the Bioconductor RELEASE_3_18 for drawProteins. The way I did it felt a bit hacky but I'm hoping it will work. I did have to set up new SSH - so thanks for the pointers for that too. If you have a moment and you can point me towards a resource that makes it more obvious how to push code changes from Github -> dev -> release, I would be grateful. I feel sure the advice is somewhere there and I just don't understand it or utilise it properly. Well thanks again, Paul
On Wed, Mar 6, 2024 at 2:23 PM Kern, Lori <lori.sheph...@roswellpark.org> wrote: > Could you please show the commands you are trying along with a > git remote -v > > > I've check the configuration on our end and everything looks correct. > You'll need to make sure you are pointing to one of the uploaded ssh keys > on the BiocCredentials account (or create a new one if you are on a > different machine) > There is useful information found at > > http://contributions.bioconductor.org/git-version-control.html#new-package-workflow > > and a FAQ section > http://contributions.bioconductor.org/git-version-control.html#faq > See especially: #13, #14, and#15 > > > > > Lori Shepherd - Kern > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------------------------------ > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Paul > Brennan <brennanpincard...@gmail.com> > *Sent:* Wednesday, March 6, 2024 9:00 AM > *To:* bioc-devel@r-project.org <bioc-devel@r-project.org> > *Subject:* [Bioc-devel] Having problems pushing changes to Bioconductor... > > Sorry to bother you I feel as if I am asking a very stupid question but I > can't solve it on my own. > > I am getting build errors and I worked out why (a failed test) and changed > my code on Github to correct this: > > https://secure-web.cisco.com/1C-fx1Fhx9rZfPJTM0FHB-mLGMfkL6M96AEW9fEr4L0xDKiuAu--2umi29DrHFpl_pWRTIjKBCcIalvMrcKCt2WFZENpLe4QuvKhgBOx9FOmJ1VkGT_u2Tv-bmbWgK1bzBmO2mPC6LF_ZnTpUJjRkDpIsTOP-BtsjhP3a6yGUvmLlwtIfo1lMUD4Gl1ipcUIn7CVHqgGN2GERwAMmnTyqjQtg2yb1035kNIfkRFrK8s40RCrbUytSiymWgBBR8Exk1s3xX51m2KFuuiCSEk9Bhc0bxKl3CUW_V5exgMKWeQS9aGPOCh6NCLMQ6kSbtKPF/https%3A%2F%2Fgithub.com%2Fbrennanpincardiff%2FdrawProteins > I have checked R CMD Check and it is fine with no errors or warnings :-) > > Now it is time to try to push these onto Bioconductor but I can't do this. > I've tried various sources and it seems the key point is that I haven't > organised the correct access rights to push upstream. > > Can some one advise or point towards a resource that I can work with > please? > > Thanks, > Paul > > Paul Brennan > package maintainer for drawProteins > > https://secure-web.cisco.com/1AJF0ylkW0LYxK_qOGPSaOg0tBDtXraJO8oy5e6dogibE4DF9ygkXszBgGnaEAuTrFGo8tVABQpcGRhBGJi9SSrdtEVRh8gBIMdRVbgktq3CMRZeMflbYC9d5e_qX0SnD0y2A9PnkuC6gdiIW369zhL3MSRmVe0PjaYJGksjmc8O6tGYJo5LVpBjWefmt_eKLvyGwCEaBKxAo6V8iytwL4fjjFWGteiCsqbbIu6j-Hk3P3ABsPR6VryZv0WAqfOAjEpTBtuNxXP3ziZ4lc5nJxjjJLETQ9eerV-4QBseU5jxIACFREUJWt0g3Qzsnw24D/https%3A%2F%2Fbioconductor.org%2Fpackages%2Frelease%2Fbioc%2Fhtml%2FdrawProteins.html > which is giving a build error. > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > > https://secure-web.cisco.com/1jtNofEmaYZgBzviy6yomq6OhQitQ2-XaFsj3w3cbUO9-ooCBrC-66NZ7_qPnF-4rImp8d7AZSynOz4F5saaenkigYkjedWSEQkgbxvgGDxlWfEn3S-TS5lxs2lFxVhUengZUEJ4eIniSLTx3iAqABfKMXfrumIO_WbwKbUr6P5kN9VfD_vtpifigwCckByiEJkwvDV198aQHQo9Y2I3A5fO1TghvfcM_AghogEfIjRdEsHovFRKfZrJS1l3-REhNYNcL-xQdvxmNMFrcVS-MmAZ3VJHqMtgTMzxfuCgwlTfkx-5oXPLqrbFKAh4h1xFM/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel