We have to re-generate these packages - there was an error that excluded 65
genes (total) from nine of the species. They will be available early next week.
Sorry for the delay!
Best,
Jim
-----Original Message-----
From: Bioc-devel <bioc-devel-boun...@r-project.org> On Behalf Of Kern, Lori via
Bioc-devel
Sent: Thursday, March 28, 2024 8:47 AM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Bioconductor 3.19 db0s, OrgDbs, and TxDbs now available
Hello Bioconductor community,
The newest db0, OrgDb, and TxDb annotation packages for the upcoming
Bioconductor 3.19 release are up and available for download in the devel
version of Bioconductor.
The deadline for submitting contributed annotation packages will be Wednesday
April 17 th.
The new db0 packages are:
anopheles.db0_3.19.0.tar.gz
arabidopsis.db0_3.19.0.tar.gz
bovine.db0_3.19.0.tar.gz
canine.db0_3.19.0.tar.gz
chicken.db0_3.19.0.tar.gz
chimp.db0_3.19.0.tar.gz
ecoliK12.db0_3.19.0.tar.gz
ecoliSakai.db0_3.19.0.tar.gz
fly.db0_3.19.0.tar.gz
human.db0_3.19.0.tar.gz
malaria.db0_3.19.0.tar.gz
mouse.db0_3.19.0.tar.gz
pig.db0_3.19.0.tar.gz
rat.db0_3.19.0.tar.gz
rhesus.db0_3.19.0.tar.gz
worm.db0_3.19.0.tar.gz
xenopus.db0_3.19.0.tar.gz
yeast.db0_3.19.0.tar.gz
zebrafish.db0_3.19.0.tar.gz
The new OrgDb packages are:
GO.db_3.19.0.tar.gz
org.Ag.eg.db_3.19.0.tar.gz
org.At.tair.db_3.19.0.tar.gz
org.Bt.eg.db_3.19.0.tar.gz
org.Ce.eg.db_3.19.0.tar.gz
org.Cf.eg.db_3.19.0.tar.gz
org.Dm.eg.db_3.19.0.tar.gz
org.Dr.eg.db_3.19.0.tar.gz
org.EcK12.eg.db_3.19.0.tar.gz
org.EcSakai.eg.db_3.19.0.tar.gz
org.Gg.eg.db_3.19.0.tar.gz
org.Hs.eg.db_3.19.0.tar.gz
org.Mm.eg.db_3.19.0.tar.gz
org.Mmu.eg.db_3.19.0.tar.gz
org.Pt.eg.db_3.19.0.tar.gz
org.Rn.eg.db_3.19.0.tar.gz
org.Sc.eg.db_3.19.0.tar.gz
org.Ss.eg.db_3.19.0.tar.gz
org.Xl.eg.db_3.19.0.tar.gz
Orthology.eg.db_3.19.0.tar.gz
PFAM.db_3.19.0.tar.gz
The new TxDb packages are:
TxDb.Hsapiens.UCSC.hg38.refGene_3.19.0.tar.gz
TxDb.Mmusculus.UCSC.mm39.refGene_3.19.0.tar.gz
Thank you
Lori Shepherd - Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
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