I might suggest adding a new ssh key to your BiocCredentials account as it seems to be having issues with your key
Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Carlotta Meyring <carlotta.meyr...@uniklinik-freiburg.de> Sent: Tuesday, April 23, 2024 7:20 AM To: Kern, Lori <lori.sheph...@roswellpark.org>; bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: AW: [Bioc-devel] git commit issues Thank you very much, but still when I run: git push upstream main:devel, I get the same error message: error: cannot spawn https://github.com/cmeyring.keys: No such file or directory error: cannot spawn https://github.com/cmeyring.keys: No such file or directory fatal: unable to fork Carlotta Meyring Methods of Modelling and Bioinformatics in Systems Biomedicine (MSB) Institute of Medical Biometry and Statistics (IMBI) Faculty of Medicine and Medical Center - University of Freiburg Postal Address: Stefan-Meier-Str. 26, 79104 Freiburg Mail: carlotta.meyr...@uniklinik-freiburg.de Phone: +49 761 270 83805 Homepage: www.uniklinik-freiburg.de/imbi/msb.html<http://secure-web.cisco.com/1BWMZS7l4AGYT32E92dROhhM3cZR0mXRr0rm1mCf3XGpnYegf686-dW6GWNqXodkZufZ7MuVI8tNmBwEiui2N5ayOj6LeFJjP9kNWxaU0vf40kmU-qZORa4j0n8K-eaZnIbS5RJL3xip-X5k_N-R6umsSqpgMTUUb6zW4oPGj60YWSv94Z6Xs7ImwM7fylG8oNAS8tD2g88kN9haoJz6qHT1DGCQzo7c3XaQJeudtvmNFXSFaobH3p3YKjb-nN_Ug5xrRGBfkABQerKGAUJj8x-Q6y-fujr4-sYmxX6Pd_r1cy3IwY0ik4Q0A2YgU52uv/http%3A%2F%2Fwww.uniklinik-freiburg.de%2Fimbi.html> Von: Kern, Lori <lori.sheph...@roswellpark.org> Gesendet: Dienstag, 23. April 2024 13:16 An: Carlotta Meyring <carlotta.meyr...@uniklinik-freiburg.de>; bioc-devel@r-project.org Betreff: Re: [Bioc-devel] git commit issues Bioconductor does not have a main branch. Please refer to documentation http://contributions.bioconductor.org/git-version-control.html<http://secure-web.cisco.com/1CWLafUqEUvpL8uB9Kx8Zd4JHV-S4X2hsuGvdXKhtsq4SuDmNFyGmFlkJD3LM1oaayKVUDDUeOqxDtkNbaxjWUM_ufJDDgnuvGLN_mdtqDc2OQvmk0aVFixAOoETsRLf_Y8Y5HZU9t2oH4_sg_phi0iAX096COCbbvisoIqU1Dv9r-l1am76Xtoub40-pAhXv250YMDNKaLGOe-RtEetDvOVQCq66Xs0HG707jRlnH18QJ7-dcmXXFLGaQQKxQuTD_J7o6CUJEsdyT9Rzd9Vk9azRCa4sVpblvfFtfXdHaJEsj3AHFaa2uMS8XxJAA5BI/http%3A%2F%2Fcontributions.bioconductor.org%2Fgit-version-control.html> Bioconductor default branch is devel. If you have set up where your default branch is main do to another remote (like github), You can map main to devel with something like the following git push upstream main:devel Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org<mailto:bioc-devel-boun...@r-project.org>> on behalf of Carlotta Meyring <carlotta.meyr...@uniklinik-freiburg.de<mailto:carlotta.meyr...@uniklinik-freiburg.de>> Sent: Tuesday, April 23, 2024 7:04 AM To: bioc-devel@r-project.org<mailto:bioc-devel@r-project.org> <bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>> Subject: [Bioc-devel] git commit issues Hello, I submitted a package named zitools to Bioconductor. Now I want to committ he updatest o Bioconductor. However, this is not working. My output of: $ git remote -v origin https://secure-web.cisco.com/1GnPQpRFt9TG8Nx9p4h1Z4s0wSct926b0z1tufMD1WU2mNF0fsogaDXit-OEpae5_TTuayObS0WA6uaEPYzzxlZPnIB32lupQMWF5sIcLl7CYmwdkmLJgZiDCQiJMyfX7r_xVsLaagPMfz30RViw070xq2YaudeE_TWg75Zenet-6p96pTGE-_yF4Ma-aRKX617hS0DXZll2izCm1l4wDG2JcHy5AfQA1DALcetU2mIF5DphPhTJoTLvXYjbyZB3a1x1720-BIxVXG__2vDN1HfVNUrL0krNSJoGhsxtieXA98d124cn_Hvv-7ZJneM5s/https%3A%2F%2Fgithub.com%2Fkreutz-lab%2Fzitools.git (fetch) origin https://secure-web.cisco.com/1GnPQpRFt9TG8Nx9p4h1Z4s0wSct926b0z1tufMD1WU2mNF0fsogaDXit-OEpae5_TTuayObS0WA6uaEPYzzxlZPnIB32lupQMWF5sIcLl7CYmwdkmLJgZiDCQiJMyfX7r_xVsLaagPMfz30RViw070xq2YaudeE_TWg75Zenet-6p96pTGE-_yF4Ma-aRKX617hS0DXZll2izCm1l4wDG2JcHy5AfQA1DALcetU2mIF5DphPhTJoTLvXYjbyZB3a1x1720-BIxVXG__2vDN1HfVNUrL0krNSJoGhsxtieXA98d124cn_Hvv-7ZJneM5s/https%3A%2F%2Fgithub.com%2Fkreutz-lab%2Fzitools.git (push) upstream g...@git.bioconductor.org:zitools/zitools.git<mailto:g...@git.bioconductor.org:zitools/zitools.git> (fetch) upstream g...@git.bioconductor.org:zitools/zitools.git<mailto:g...@git.bioconductor.org:zitools/zitools.git> (push) and if I check ssh -T g...@git.bioconductor.org<mailto:g...@git.bioconductor.org> I have both read (R) and write (W) permissions for the package. However if I run: git push upstream main I get the following error. error: cannot spawn https://secure-web.cisco.com/1bfCTvE0S1JmnGSX6z44y7yimg-nfasTqmfDDXfXVBOI1bpKy7NuEFFLr5w0u3fbJ9lMuxWaPPHwL5RcAaAycGcJ39-zsU3QRgt0PId5_xwPJuh8eTK3aV9wcQdpuDR9NdK2-TTTjc-n23sir6NbYEVOMjLUYduMsu6_hOEDYkRO_UrLZ4CplEWgV9f4wYBcj7KRBoNjZ5KilpXhEL2LF-ifif9meNJnoAMx--FEbEp9PPb5IkLsRLn79Xgp5D-kthzcYQhQbr0iEuYvBDVqKETPtjHhPLG7_1Dt7KgQJBDd-xFyoZHAfvQdgsr-UP01k/https%3A%2F%2Fgithub.com%2Fmyname.keys%3A No such file or directory error: cannot spawn https://secure-web.cisco.com/1bfCTvE0S1JmnGSX6z44y7yimg-nfasTqmfDDXfXVBOI1bpKy7NuEFFLr5w0u3fbJ9lMuxWaPPHwL5RcAaAycGcJ39-zsU3QRgt0PId5_xwPJuh8eTK3aV9wcQdpuDR9NdK2-TTTjc-n23sir6NbYEVOMjLUYduMsu6_hOEDYkRO_UrLZ4CplEWgV9f4wYBcj7KRBoNjZ5KilpXhEL2LF-ifif9meNJnoAMx--FEbEp9PPb5IkLsRLn79Xgp5D-kthzcYQhQbr0iEuYvBDVqKETPtjHhPLG7_1Dt7KgQJBDd-xFyoZHAfvQdgsr-UP01k/https%3A%2F%2Fgithub.com%2Fmyname.keys%3A No such file or directory fatal: unable to fork Any help is highly appreciated. Thanks in advance, Carlotta Carlotta Meyring Methods of Modelling and Bioinformatics in Systems Biomedicine (MSB) Institute of Medical Biometry and Statistics (IMBI) Faculty of Medicine and Medical Center - University of Freiburg Postal Address: Stefan-Meier-Str. 26, 79104 Freiburg Mail: carlotta.meyr...@uniklinik-freiburg.de<mailto:carlotta.meyr...@uniklinik-freiburg.de> Phone: +49 761 270 83805 Homepage: http://secure-web.cisco.com/12cYQm0BZOpBmyHwRDtdk_I-5jlGrvbxv8i3g0J8wNkoKBLPoKY_vPDGfKJ2H8ciFuXBzxpJgVz91isuH_FXfvmi87-balDCB76K63rbbLd51ogmmL68wigw88VF5jw7T9Re-6vIgniPVDUdhX1djUVwDUXrNZ9E1gu6AJDlnCiOaKbyZ4xzGpmu9mEya-E7O4qb1kKFD0pTtpW7HRb3XvOVWxNj-PzVPHSnujHIajweDSmsIc2u8xXNjw7No6uE33fsCFxAWC1rFnOfZT9C11SipQpszJ-A0-pQYSRPp3Qncq0rRBDl38Hem448R4OjR/http%3A%2F%2Fwww.uniklinik-freiburg.de%2Fimbi%2Fmsb.html<http://secure-web.cisco.com/1R4JrM9-sEUVTPnau9d1hcgSzQNSJQofy-Ui6cNGM_9UjoCt9pkicBP7OQMeTKfwuyej7V6VnMWz09h6Ue48_0mRhwHqNvorWrSV_QAIwIItIY4XqrcFBvyxoCWYB3jcYTTf_CKIwywZmkCtIfRaM5igOyLYEAzSQDD_ylAzDYZVTgwANWyCN-aK_sR6Nz3_z04QH1Kuqc1-8Egya16goOdvD5MuDz5rCo5jaDtLnTLInZli_YWN_4EW-ZcKcZwtLXo8BVaybDjaYbt_QBxydHybVIKCb1umlvOWvVwAVWglflmFUjQfN2jWYKS45EfQD/http%3A%2F%2Fwww.uniklinik-freiburg.de%2Fimbi.html><http://secure-web.cisco.com/12cYQm0BZOpBmyHwRDtdk_I-5jlGrvbxv8i3g0J8wNkoKBLPoKY_vPDGfKJ2H8ciFuXBzxpJgVz91isuH_FXfvmi87-balDCB76K63rbbLd51ogmmL68wigw88VF5jw7T9Re-6vIgniPVDUdhX1djUV wDUXrNZ9E1gu6AJDlnCiOaKbyZ4xzGpmu9mEya-E7O4qb1kKFD0pTtpW7HRb3XvOVWxNj-PzVPHSnujHIajweDSmsIc2u8xXNjw7No6uE33fsCFxAWC1rFnOfZT9C11SipQpszJ-A0-pQYSRPp3Qncq0rRBDl38Hem448R4OjR/http%3A%2F%2Fwww.uniklinik-freiburg.de%2Fimbi%2Fmsb.html%3chttp:/secure-web.cisco.com/1R4JrM9-sEUVTPnau9d1hcgSzQNSJQofy-Ui6cNGM_9UjoCt9pkicBP7OQMeTKfwuyej7V6VnMWz09h6Ue48_0mRhwHqNvorWrSV_QAIwIItIY4XqrcFBvyxoCWYB3jcYTTf_CKIwywZmkCtIfRaM5igOyLYEAzSQDD_ylAzDYZVTgwANWyCN-aK_sR6Nz3_z04QH1Kuqc1-8Egya16goOdvD5MuDz5rCo5jaDtLnTLInZli_YWN_4EW-ZcKcZwtLXo8BVaybDjaYbt_QBxydHybVIKCb1umlvOWvVwAVWglflmFUjQfN2jWYKS45EfQD/http%3A%2F%2Fwww.uniklinik-freiburg.de%2Fimbi.html%3e> [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://secure-web.cisco.com/1XLGwqRTfmMO98IgjtS1Yt9VUbQA_EJlg6LSKZY1FLyiqVzPnDHtntruhUJwJc5av2jFbsxH7QXHWg8sbTMj0X8PlZwGgVmYHJ4fK_dByg9RGjoJIMbBfkZ1WELRvFSUQ3z3vXcOEFHANWR2E2DDd9SqnjYVx-XEvbwvpN1hZZ4cxsTxA4tq8TpBgZlPXAimm9fdwmtcE-lEhVVe7XX7rYHzXpXJ1ksthMDqVffo2D0CODF8lgMLpkSCMKv6j_2cSNjYoHhR5SBI_ts4Kiidla6B4jA-uP5Gco-Br6KD5SSLEti-mCBzCr0jSAEgtFIFz/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. 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