Thank you, much appreciated! On Tue, Apr 23, 2024 at 1:08 PM Kern, Lori <lori.sheph...@roswellpark.org> wrote:
> I see it is now building and checking cleanly. We will un-deprecate the > package. > > Lori Shepherd - Kern > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------------------------------ > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Kern, > Lori via Bioc-devel <bioc-devel@r-project.org> > *Sent:* Monday, April 22, 2024 9:08 AM > *To:* bioc-devel@r-project.org <bioc-devel@r-project.org>; Joshua > Campbell <c...@bu.edu> > *Subject:* Re: [Bioc-devel] singleCellTK > > Please try to push the change to fix the gvsa issue. We generally will > only un-deprecate when we see a clean build/check report for at least the > linux platform especially since the package has been failing for an > extended period of time (since early December). > > > > ________________________________ > From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Joshua > Campbell via Bioc-devel <bioc-devel@r-project.org> > Sent: Monday, April 22, 2024 8:34 AM > To: bioc-devel@r-project.org <bioc-devel@r-project.org> > Subject: [Bioc-devel] singleCellTK > > Hello, > The package singleCellTK > < > https://secure-web.cisco.com/1wq8O1kSgJOUZsgHipzl-RZLqngGu3sumYdSdeICLNbaEfv7UgjYXQCq-KjeIeo2IQebPljENPurqCjIR52uece6VGfVOR-pnD8SRKU7TLNkof3-XXl98Suki3qq41FV9qTh0qMkw36ptlfnb5pMgdYmdhLXFrHQSI33LXovrzEMqTSDVL5de0eChB4wYWt3WCM4pyThcGUs8dT_vTluBqZAKWBrVmF1MLLCDZLuFLNpqplrox9UptS5DvdVoeo95UpfzRtKyVgJ8srififHUpyiaeEPGT7RAB5OqGqMaZkIyLzR0ZB1BWnV73JDTOuGO/https%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2FsingleCellTK%2F> > is > currently slated for depreciation in Bioc devel (3.19). We have been > actively fixing the dependency issues, mainly the underlying changes in > Seurat update. We are fixing one last issue to be compatible with an update > in the GSVA package which should allow the linux and macos builds to pass > (should be done in the next day). The remaining windows build failing is > due to other BioC packages not currently passing, but this is outside of > our control. > > We have also changed the maintainer as the previous maintainer left the > lab. > > We were hoping that the depreciation tag could be removed. We will > continue to address any other issues that pop up going forward > in release/devel. > > Thanks, > Josh > > -- > Joshua D. Campbell, Ph.D. > Section of Computational Biomedicine > BU Chobanian & Avedisian School of Medicine > 72 East Concord Street, E604B | Boston, MA 02118 > Phone: (617) 358-7260 | Email: c...@bu.edu > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > > https://secure-web.cisco.com/1kHZyNpWrzZ49GVVB7LC0EHpn2zWBDsZ4oEMuAhFq7PZ4Th9UsuXT6TZwg8b4sdcneEfcvE92siDBIdi30iYXG6OucDI-zeq4RlzBbIZ9XDJcNwKOqwrPsdP6MTRPC_25Jj4o01IgwEekV0DzsdKjG1-o68OFoGi73jj8ZbOMYPSPGZeGoIE2gfbkQ7JyXVfXTK0mPqon_HxmJsAwvqGWtiBTJOUqtkP2v4PPKwPbCtZOWOM2AYtH5sPZMFXDhmygMQ_DQ_mk5tmUxUmBmis__v5Z8IJkoj7-ZRNiBC0P7ab3m5nQdQl25EAkwje-xc5Z/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > > https://secure-web.cisco.com/1waBFK7le1TvQqQIwl85K8t4zQVdplrP2Hb8928HPDViq59J23LSdAIo4OqkKlfgYmBBfRRGV2ctzFQAsvwZGyubdn09BaIcf58CJkBmKhJ4iwD_gMseFWkgEFG6NNYugpVD2XE7cTSU_d5H5ckp9D3pWx2POhQamqPDLUwaPCPSBqldRMSs6NA6YzPWp3hR4eo1cj2eZSJVB7--VYjNtFSu3_pkZQ7PzMOIW_0kz59eX5Sl38cP1vUvhTnSjFYUdQR34u0k2QIExiPWVaKG-eDRUzSmvLA1gfiG1t8Ot9RS4n0r-NAbvvm_TlZ9LRKcw/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > -- Joshua D. Campbell, Ph.D. Section of Computational Biomedicine BU Chobanian & Avedisian School of Medicine 72 East Concord Street, E604B | Boston, MA 02118 Phone: (617) 358-7260 | Email: c...@bu.edu [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel