In the past Bioconductor provided an install script that was sourced directly from the Bioconductor.org website to install Bioconductor packages. We have since moved away from this practice in favor of BiocManager since sourcing in this way is a known security risk. The scripts have remained on the website for legacy and reproduce ability. To increase security, we will be moving these scripts to a github repository https://github.com/Bioconductor/LegacyInstall . They will remain available to use for the appropriate legacy versions of Bioconductor (<=3.5).
There is also an inconsistent data directory for accessing annotation and experiment packages. We will be removing this directory https://bioconductor.org/packages/data in favor of the standard retrieval locations. The process might be more involved to get packages for older R/Bioc but all packages are available, and we will assist in anyway if there are any questions, concerns, or issues with retrieval. We will begin this process in June. Cheers Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
