Hi there, I am getting errors in the SpliceWiz build on BIoc 3.19. However I cannot reproduce this issue on our local server using the bioconductor docker.
The vignette failure appears to be due to a section of code that fetches a cached data file using BiocFileCache. The data files are downloaded on first use, and then recalled from cache on subsequent uses. Given the code has failed on a step that reads a cached file (it throws an error on bioconductor servers, but cannot be reproduced locally), I highly suspect the issue is with corrupt cached files on the bioc servers Could the administrators manually remove the SpliceWiz cache to see whether this is the issue? The SpliceWiz cache is located in tools::R_user_dir(package = "SpliceWiz", which = "cache") Thanks in advance, Alex ---------- Forwarded message --------- From: <bbs-nore...@bioconductor.org> Date: Sat, 29 Jun 2024 at 09:00 Subject: SpliceWiz problems reported in the Multiple platform build/check report for BioC 3.19 To: <a.w...@centenary.org.au> [This is an automatically generated email. Please don't reply.] Hi SpliceWiz maintainer, According to the Multiple platform build/check report for BioC 3.19, the SpliceWiz package has the following problem(s): o ERROR for 'R CMD build' on nebbiolo1. See the details here: https://bioconductor.org/checkResults/3.19/bioc-LATEST/SpliceWiz/nebbiolo1-buildsrc.html Please take the time to address this by committing and pushing changes to your package at git.bioconductor.org Notes: * This was the status of your package at the time this email was sent to you. Given that the online report is updated daily (in normal conditions) you could see something different when you visit the URL(s) above, especially if you do so several days after you received this email. * It is possible that the problems reported in this report are false positives, either because another package (from CRAN or Bioconductor) breaks your package (if yours depends on it) or because of a Build System problem. If this is the case, then you can ignore this email. * Please check the report again 24h after you've committed your changes to the package and make sure that all the problems have gone. * If you have questions about this report or need help with the maintenance of your package, please use the Bioc-devel mailing list: https://bioconductor.org/help/mailing-list/ (all package maintainers are requested to subscribe to this list) For immediate notification of package build status, please subscribe to your package's RSS feed. Information is at: https://bioconductor.org/developers/rss-feeds/ Thanks for contributing to the Bioconductor project! -- *Alex Wong BSc(Med)/MBBS FRACP FRCPA PhD* Research Officer, Gene and Stem Cell Therapy Program, Centenary Institute -- <https://www.centenary.org.au> [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
