Thanks Lori. Yep, both packages can be deprecated.
Best, Nirav Malani On Jul 14, 2025 at 12:32 PM -0400, Kern, Lori <lori.sheph...@roswellpark.org>, wrote: > Thank you for reaching out. We can take care of the deprecation for you. > Would you also like hiReadsProcessor deprecated as hiReadsProcessor depends > on hiAnnotator and will not be able to build without it? I notice you are > also the maintainer of that package. > > Cheers > > Lori Shepherd - Kern > Bioconductor Core Team > Roswell Park Comprehensive Cancer Center > Department of Biostatistics & Bioinformatics > Elm & Carlton Streets > Buffalo, New York 14263 > From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Nirav Malani > <malni...@gmail.com> > Sent: Monday, July 14, 2025 12:28 PM > To: bioc-devel@r-project.org <bioc-devel@r-project.org> > Subject: [Bioc-devel] Deprecate hiAnnotator > > Hi, > > I am reaching out to discuss possibility to flag this package as “archived” > or deprecated. I don’t have time to support this package anymore and don’t > think there are any active users who will benefit from this software given > other advanced package now available on BioC. > > Best, > Nirav Malani > On Jul 14, 2025 at 12:15 PM -0400, bbs-nore...@bioconductor.org, wrote: > > [This is an automatically generated email. Please don't reply.] > > > > Hi hiAnnotator maintainer, > > > > According to the Multiple platform build/check report for BioC 3.22, > > the hiAnnotator package has the following problem(s): > > > > o ERROR for 'R CMD build' on nebbiolo2. See the details here: > > https://secure-web.cisco.com/18ncuGDx6-Exk-lI3quLQDcr0wEmN6J_7kjDc9MQXa9-BQKZ6ppzabbBt9fSLempXZnWjK_t-Wlz9hUQuZoC2aslvfBStJc8WcaWt0q8orW6vzxkZh3oD1D5mkhtyGVTvrukDdWCaOg6mETuFr6g_fCMl5PbxNPuYKLiEDLWpW0Jsxl6M7Z7DT5DgefijGf1xX_bSmvds-szs9uTvd7ifYof4TQD_CquN2lbJJrkVMfCjjQCFOZPBhij0EGnfUG5V3jJK4v035TbBIW1xNLHne-vtoLrOKB20adoEF3nWUNv1p-eO2lLaX7hec6zxGOLR/https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.22%2Fbioc-LATEST%2FhiAnnotator%2Fnebbiolo2-buildsrc.html > > > > Please take the time to address this by committing and pushing > > changes to your package at git.bioconductor.org > > > > Notes: > > > > * This was the status of your package at the time this email was sent to > > you. > > Given that the online report is updated daily (in normal conditions) you > > could see something different when you visit the URL(s) above, especially if > > you do so several days after you received this email. > > > > * It is possible that the problems reported in this report are false > > positives, > > either because another package (from CRAN or Bioconductor) breaks your > > package (if yours depends on it) or because of a Build System problem. > > If this is the case, then you can ignore this email. > > > > * Please check the report again 24h after you've committed your changes to > > the > > package and make sure that all the problems have gone. > > > > * If you have questions about this report or need help with the > > maintenance of your package, please use the Bioc-devel mailing list: > > > > https://secure-web.cisco.com/1s6u8XPMxRzVLdsFY80ApxCop6Jgm1WJnKLNy9cCrQy7jy_FVwideJsL1HbFd7T4Y8o6LAe27gCKRQoN-Kp7LdcsPu-vwfIyCak3b5ICR-st6-YuNw73F1W03P6abNpyEiRNdEmHISYdMRwgUkq1O-y2S07a7i0nPkl03kkYD0AsAvjU8AVM-8UD_g620wrIUQZDKSAK4IvClL2z8yZ8c02zGfb-pNdtVtifU2F1CGM7T-vhb2njOc_LKkMchWWBdVnTbGUYFLrgchjyFi6l5-CpIkAN6hRlLFwkgWBQTd9YTtq-I41PGlMWk0tITqzy-/https%3A%2F%2Fbioconductor.org%2Fhelp%2Fmailing-list%2F > > > > (all package maintainers are requested to subscribe to this list) > > > > For immediate notification of package build status, please > > subscribe to your package's RSS feed. 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