Hi Lori , I am writing to follow up on your message below. You mentioned you would be in touch off the mailing list to ask further questions and coordinate updates, but I have not yet heard back.
Could you please let me know if there are any updates or if you need anything further from my side? Thank you in advance for your help. Best regards, Emanuela Da: Kern, Lori <[email protected]> Data: marted�, 23 dicembre 2025 alle ore 13:49 A: Emanuela Iovino <[email protected]>, [email protected] <[email protected]>, [email protected] <[email protected]> Oggetto: Re: uncoverappLib repository update I apologize for the delay. I was away on holiday. I can assist with this request. I will be in touch off mailing list to ask some further questions and coordinate updates. Cheers, Lori Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <[email protected]> on behalf of Emanuela Iovino <[email protected]> Sent: Saturday, December 13, 2025 4:07 PM To: [email protected] <[email protected]>; [email protected] <[email protected]> Subject: [Bioc-devel] uncoverappLib repository update Dear Bioconductor Team, I am writing regarding the uncoverappLib package. Due to an issue with my GitHub account (loss of access keys), I had to recreate the repository where the development version of uncoverappLib was hosted. As a consequence, the current GitHub repository history does not fully reflect the original development timeline. In the meantime, I have made important updates to the package, including (v.2.1) (https://secure-web.cisco.com/1-U0OToUty0B-4e_W4mHNOpNkIPb4gMbY2HXiv05XnA9OhG8VclQ1zw28DN1fh5XzjagJQ9tk11pUQrPFOYeRxbKC6IRKtHgM_7S5u4bil_s8uNlCU7Ym9EaCa_VdJD-GDf3Xvx2dI6lU8s_zRXYbM7lgyC3QGwzfU_zXz6kjqtvWVN7MlRUVLacK9uY4mVUUjurC8RspLrARqf0sSwQR6nv9yu61Iw1IUg1nRpGrGyEKZKZjElkf3pZFrZYvSvVcvHA1MQLKtMhMi5HOn19T0yMLrh1C89EdcU6TT18GAwUJQMp5ko6V5vkrxFaXFgDF/https%3A%2F%2Fgithub.com%2Femanuela04%2FuncoverappLib%2Ftree%2Fv2.1.0): * bug fixes in hg38 * improvements to existing functionality and the speed of library * general maintenance updates I would like to kindly ask for guidance on how to proceed with integrating these updates into the next Bioconductor release, and whether there are any recommended steps for handling the repository transition and package assembly under these circumstances. Thank you very much for your time and support. Best regards, Emanuela Iovino, PhD Computational Genomics Unit - BOSCO IRCCS Azienda Ospedaliero-Universitaria di Bologna Policlinico di Sant'Orsola, Pav. 1, Via Pelagio Palagi 9, 40138 Bologna tel: +390512142893 email: [email protected]<mailto:[email protected]>; [email protected]<mailto:[email protected]> [[alternative HTML version deleted]] _______________________________________________ [email protected] mailing list https://secure-web.cisco.com/1eok6hvW0F_uGl1tlutOw0aUchBSM0hQUiAAAz1g_4YI_RLSfbCxoEJDMUmJkkk1J-iWS57B8pDUTmuyaMDA7h6k5yv86x114KwG3asXjfKZ-l5Zjz6AN28eCeIGZK0q0NIqgpPfma8TBdSftVFgO2kceb1CgcARBr-_8uFTiQklcKXBHmou_bawJhTx0KmkrP39MUCI9rOl2xMEvKgFFqKUjDw6XBUrUZ8EtSWCR8Mx9lnfUt-sgvVk0nb1njgPaEjCgK7nmGbsBcZfuCYXHXL8q0uoqK9QKXGrvFvhAfOmmND0gvrm6Qi6El2dpmchJ/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]]
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