bioc-sig-sequencing  

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• 2009/05/06 [Bioc-sig-seq] Comparing two chipseq position sets Ivan Gregoretti
• 2009/05/04 [Bioc-sig-seq] Fast inject into XStringSet objects Thomas Girke
• 2009/05/04 Re: [Bioc-sig-seq] Standard 454 quality checks? Thomas Girke
• 2009/05/04 Re: [Bioc-sig-seq] Standard 454 quality checks? Patrick Aboyoun
• 2009/05/04 Re: [Bioc-sig-seq] Standard 454 quality checks? Martin Morgan
• 2009/05/04 Re: [Bioc-sig-seq] Standard 454 quality checks? Michael Lawrence
• 2009/05/04 Re: [Bioc-sig-seq] Standard 454 quality checks? Dan Bolser
• 2009/05/04 Re: [Bioc-sig-seq] Standard 454 quality checks? Michael Lawrence
• 2009/05/04 Re: [Bioc-sig-seq] Standard 454 quality checks? Dan Bolser
• 2009/04/30 Re: [Bioc-sig-seq] About trimming adaptor of Solexa short reads Dan Bolser
• 2009/04/30 Re: [Bioc-sig-seq] gapped alignment Kasper Daniel Hansen
• 2009/04/30 Re: [Bioc-sig-seq] gapped alignment Thomas Girke
• 2009/04/30 Re: [Bioc-sig-seq] Error while trying to xyplot. Perhaps a lattice problem. Laurent Gautier
• 2009/04/30 Re: [Bioc-sig-seq] Problem loading MAQ map file in ShortRead Gordon Robertson
• 2009/04/30 Re: [Bioc-sig-seq] Problem loading MAQ map file in ShortRead Martin Morgan
• 2009/04/30 Re: [Bioc-sig-seq] Problem loading MAQ map file in ShortRead Gordon Robertson
• 2009/04/30 Re: [Bioc-sig-seq] Problem loading MAQ map file in ShortRead Martin Morgan
• 2009/04/30 Re: [Bioc-sig-seq] About trimming adaptor of Solexa short reads Dan Bolser
• 2009/04/30 [Bioc-sig-seq] Problem loading MAQ map file in ShortRead Gordon Robertson
• 2009/04/30 Re: [Bioc-sig-seq] About trimming adaptor of Solexa short reads Martin Morgan
• 2009/04/30 Re: [Bioc-sig-seq] About trimming adaptor of Solexa short reads Thomas Girke
• 2009/04/30 Re: [Bioc-sig-seq] About trimming adaptor of Solexa short reads James W. MacDonald
• 2009/04/30 Re: [Bioc-sig-seq] About trimming adaptor of Solexa short reads Dan Bolser
• 2009/04/29 Re: [Bioc-sig-seq] Error while trying to xyplot. Perhaps a lattice problem. Deepayan Sarkar
• 2009/04/29 Re: [Bioc-sig-seq] Error while trying to xyplot. Perhaps a lattice problem. Sean Davis
• 2009/04/29 Re: [Bioc-sig-seq] Error while trying to xyplot. Perhaps a lattice problem. ig2ar-saf2
• 2009/04/29 Re: [Bioc-sig-seq] how to identify differentially expressed genes? Kasper Daniel Hansen
• 2009/04/29 Re: [Bioc-sig-seq] call genomic structural variation Cei Abreu-Goodger
• 2009/04/29 Re: [Bioc-sig-seq] call genomic structural variation João Fadista
• 2009/04/29 [Bioc-sig-seq] call genomic structural variation João Fadista
• 2009/04/29 Re: [Bioc-sig-seq] Error while trying to xyplot. Perhaps a lattice problem. ig2ar-saf2
• 2009/04/28 Re: [Bioc-sig-seq] Error while trying to xyplot. Perhaps a lattice problem. Deepayan Sarkar
• 2009/04/28 [Bioc-sig-seq] Error while trying to xyplot. Perhaps a lattice problem. ig2ar-saf2
• 2009/04/28 [Bioc-sig-seq] Error while trying to xyplot. Perhaps a lattice problem. ig2ar-saf2
• 2009/04/27 [Bioc-sig-seq] how to identify differentially expressed genes? joseph
• 2009/04/27 Re: [Bioc-sig-seq] About trimming adaptor of Solexa short reads James W. MacDonald
• 2009/04/26 [Bioc-sig-seq] About trimming adaptor of Solexa short reads Xiang Xu
• 2009/04/24 Re: [Bioc-sig-seq] gapped alignment Patrick Aboyoun
• 2009/04/24 Re: [Bioc-sig-seq] gapped alignment Thomas Girke
• 2009/04/24 Re: [Bioc-sig-seq] gapped alignment Robert Gentleman
• 2009/04/24 Re: [Bioc-sig-seq] gapped alignment Thomas Girke
• 2009/04/24 [Bioc-sig-seq] gapped alignment Lana Schaffer
• 2009/04/24 Re: [Bioc-sig-seq] Chipseq package Nicolas Delhomme
• 2009/04/23 Re: [Bioc-sig-seq] chipseq package Wu, Xiwei
• 2009/04/23 Re: [Bioc-sig-seq] Input from multiple Solexa runs ig2ar-saf2
• 2009/04/23 Re: [Bioc-sig-seq] Input from multiple Solexa runs Deepayan Sarkar
• 2009/04/23 Re: [Bioc-sig-seq] Input from multiple Solexa runs ig2ar-saf2
• 2009/04/23 Re: [Bioc-sig-seq] Input from multiple Solexa runs Deepayan Sarkar
• 2009/04/23 Re: [Bioc-sig-seq] Input from multiple Solexa runs ig2ar-saf2
• 2009/04/23 Re: [Bioc-sig-seq] Input from multiple Solexa runs Deepayan Sarkar
• 2009/04/23 [Bioc-sig-seq] Input from multiple Solexa runs ig2ar-saf2
• 2009/04/23 Re: [Bioc-sig-seq] chipseq package Vincent Carey
• 2009/04/23 Re: [Bioc-sig-seq] Standard 454 quality checks? Martin Morgan
• 2009/04/23 Re: [Bioc-sig-seq] chipseq package Nicolas Delhomme
• 2009/04/23 [Bioc-sig-seq] Standard 454 quality checks? Dan Bolser
• 2009/04/23 [Bioc-sig-seq] chipseq package Wu, Xiwei
• 2009/04/22 Re: [Bioc-sig-seq] Rmpi ig2ar-saf2
• 2009/04/22 Re: [Bioc-sig-seq] Rmpi Steve Lianoglou
• 2009/04/22 Re: [Bioc-sig-seq] Rmpi Sean Davis
• 2009/04/22 [Bioc-sig-seq] Rmpi ig2ar-saf2
• 2009/04/20 Re: [Bioc-sig-seq] A myriad of classes Martin Morgan
• 2009/04/20 Re: [Bioc-sig-seq] A myriad of classes Deepayan Sarkar
• 2009/04/20 Re: [Bioc-sig-seq] A myriad of classes ig2ar-saf2
• 2009/04/20 Re: [Bioc-sig-seq] A myriad of classes Deepayan Sarkar
• 2009/04/20 Re: [Bioc-sig-seq] A myriad of classes ig2ar-saf2
• 2009/04/20 Re: [Bioc-sig-seq] A myriad of classes ig2ar-saf2
• 2009/04/20 Re: [Bioc-sig-seq] A myriad of classes Michael Lawrence
• 2009/04/20 [Bioc-sig-seq] A myriad of classes ig2ar-saf2
• 2009/04/15 Re: [Bioc-sig-seq] filtering using solexa quality scores Cei Abreu-Goodger
• 2009/04/15 Re: [Bioc-sig-seq] filtering using solexa quality scores Vincent Carey
• 2009/04/15 Re: [Bioc-sig-seq] filtering using solexa quality scores Cei Abreu-Goodger
• 2009/04/15 Re: [Bioc-sig-seq] filtering using solexa quality scores Martin Morgan
• 2009/04/15 [Bioc-sig-seq] filtering using solexa quality scores Vincent Carey
• 2009/04/14 Re: [Bioc-sig-seq] retrieving from SRA using fasp: ig2ar-saf2
• 2009/04/13 Re: [Bioc-sig-seq] retrieving from SRA using fasp: Kasper Daniel Hansen
• 2009/04/13 [Bioc-sig-seq] retrieving from SRA using fasp: Vincent Carey
• 2009/04/08 Re: [Bioc-sig-seq] Linear interpolation for BED formatted data Wolfgang Huber
• 2009/04/08 [Bioc-sig-seq] Linear interpolation for BED formatted data ig2ar-saf2
• 2009/03/31 Re: [Bioc-sig-seq] alignQuality gives NA Martin Morgan
• 2009/03/31 [Bioc-sig-seq] alignQuality gives NA joseph
• 2009/03/31 Re: [Bioc-sig-seq] analyze Bowtie output with qa() Martin Morgan
• 2009/03/31 [Bioc-sig-seq] analyze Bowtie output with qa() joseph
• 2009/03/26 Re: [Bioc-sig-seq] filtering adaptors again Lana Schaffer
• 2009/03/26 Re: [Bioc-sig-seq] filtering adaptors again Patrick Aboyoun
• 2009/03/26 Re: [Bioc-sig-seq] filtering adaptors again Martin Morgan
• 2009/03/26 Re: [Bioc-sig-seq] filtering adaptors again Cei Abreu-Goodger
• 2009/03/26 [Bioc-sig-seq] filtering adaptors again Lana Schaffer
• 2009/03/25 Re: [Bioc-sig-seq] pileup problem with converted Bowtie output joseph franklin
• 2009/03/24 Re: [Bioc-sig-seq] pileup problem with converted Bowtie output Martin Morgan
• 2009/03/24 [Bioc-sig-seq] pileup problem with converted Bowtie output joseph franklin
• 2009/03/23 Re: [Bioc-sig-seq] Reducing Solexa's export.txt in preparation for aChIP-seq analysis. Deepayan Sarkar
• 2009/03/23 Re: [Bioc-sig-seq] Reducing Solexa's export.txt in preparation for aChIP-seq analysis. ig2ar-saf2
• 2009/03/22 Re: [Bioc-sig-seq] Reducing Solexa's export.txt in preparation for aChIP-seq analysis. Deepayan Sarkar
• 2009/03/19 Re: [Bioc-sig-seq] Reducing Solexa's export.txt in preparation for aChIP-seq analysis. Martin Morgan
• 2009/03/19 Re: [Bioc-sig-seq] Reducing Solexa's export.txt in preparation for aChIP-seq analysis. ig2ar-saf2
• 2009/03/19 Re: [Bioc-sig-seq] Reducing Solexa's export.txt in preparation for aChIP-seq analysis. João Fadista
• 2009/03/19 Re: [Bioc-sig-seq] Reducing Solexa's export.txt in preparation for a ChIP-seq analysis. Robert Gentleman
• 2009/03/19 [Bioc-sig-seq] Reducing Solexa's export.txt in preparation for a ChIP-seq analysis. [email protected]
• 2009/03/13 Re: [Bioc-sig-seq] Coercing to "GenomicData" Michael Lawrence
• 2009/03/13 [Bioc-sig-seq] Coercing to "GenomicData" ig2ar-saf2
• 2009/03/12 Re: [Bioc-sig-seq] Low-complexity read filtering/trimming [PolyA removal] Patrick Aboyoun
• 2009/03/12 Re: [Bioc-sig-seq] Low-complexity read filtering/trimming [PolyA removal] Middha, Sumit
• 2009/03/11 [Bioc-sig-seq] (no subject) Carl Yeoman
• 2009/03/09 Re: [Bioc-sig-seq] readAligned error: negative length vectors are not allowed Martin Morgan
• 2009/03/09 Re: [Bioc-sig-seq] readAligned error: negative length vectors are not allowed joseph
• 2009/03/09 Re: [Bioc-sig-seq] readAligned error: negative length vectors are not allowed Martin Morgan
• 2009/03/09 [Bioc-sig-seq] readAligned error: negative length vectors are not allowed joseph
• 2009/03/08 Re: [Bioc-sig-seq] report error joseph
• 2009/03/08 Re: [Bioc-sig-seq] report error Martin Morgan
• 2009/03/08 Re: [Bioc-sig-seq] report error Wolfgang Huber
• 2009/03/08 [Bioc-sig-seq] report error joseph
• 2009/03/08 Re: [Bioc-sig-seq] a general question Martin Morgan
• 2009/03/06 [Bioc-sig-seq] a general question Bogdan Tanasa
• 2009/03/03 Re: [Bioc-sig-seq] Generating heatmaps in R from RNAseq using solexa Sean Davis
• 2009/03/03 [Bioc-sig-seq] Generating heatmaps in R from RNAseq using solexa Carl Yeoman
• 2009/02/27 [Bioc-sig-seq] matchPDict error burak kutlu
• 2009/02/25 Re: [Bioc-sig-seq] Bioinformatics virtual issue on NGS Wolfgang Huber
• 2009/02/25 Re: [Bioc-sig-seq] Bioinformatics virtual issue on NGS Dan Bolser
• 2009/02/25 [Bioc-sig-seq] Bioinformatics virtual issue on NGS Wolfgang Huber
• 2009/02/23 Re: [Bioc-sig-seq] Low-complexity read filtering/trimming Hervé Pagès
• 2009/02/23 Re: [Bioc-sig-seq] Low-complexity read filtering/trimming Hervé Pagès
• 2009/02/22 [Bioc-sig-seq] Low-complexity read filtering/trimming Cei Abreu-Goodger
• 2009/02/20 Re: [Bioc-sig-seq] library chipseq Patrick Aboyoun
• 2009/02/20 Re: [Bioc-sig-seq] library chipseq Kauer Max
• 2009/02/18 Re: [Bioc-sig-seq] comparing Affy SNP arrays with deep sequencing ? Dan Bolser
• 2009/02/18 Re: [Bioc-sig-seq] comparing Affy SNP arrays with deep sequencing ? Sean Davis
• 2009/02/18 Re: [Bioc-sig-seq] comparing Affy SNP arrays with deep sequencing ? Dan Bolser
• 2009/02/18 [Bioc-sig-seq] comparing Affy SNP arrays with deep sequencing ? Wolfgang Raffelsberger
• 2009/02/18 Re: [Bioc-sig-seq] library chipseq Patrick Aboyoun
• 2009/02/18 Re: [Bioc-sig-seq] library chipseq Laurent Gatto
• 2009/02/18 [Bioc-sig-seq] library chipseq Kauer Max
• 2009/02/09 Re: [Bioc-sig-seq] adaptors Sean Davis
• 2009/02/09 [Bioc-sig-seq] adaptors Bogdan Tanasa
• 2009/02/05 Re: [Bioc-sig-seq] SOLID data rcaloger
• 2009/02/05 Re: [Bioc-sig-seq] SOLID data nicolas servant
• 2009/02/04 Re: [Bioc-sig-seq] SOLID data Daniel Klevebring
• 2009/02/04 Re: [Bioc-sig-seq] SOLID data Martin Morgan
• 2009/02/04 [Bioc-sig-seq] SOLID data nicolas servant
• 2009/01/30 Re: [Bioc-sig-seq] adapter removal Martin Morgan
• 2009/01/30 Re: [Bioc-sig-seq] adapter removal Victor Ruotti
• 2009/01/22 Re: [Bioc-sig-seq] Filtering Bowtie alignments (has nosubject before) Patrick Aboyoun
• 2009/01/22 Re: [Bioc-sig-seq] Filtering Bowtie alignments (has nosubject before) João Fadista
• 2009/01/22 Re: [Bioc-sig-seq] Filtering Bowtie alignments (has no subject before) delhomme
• 2009/01/20 Re: [Bioc-sig-seq] (no subject) Martin Morgan
• 2009/01/20 [Bioc-sig-seq] (no subject) delhomme
• 2009/01/20 [Bioc-sig-seq] EMBL Heidelberg seeks a Bioinformatician / Data Analyst delhomme
• 2009/01/18 Re: [Bioc-sig-seq] adapter removal Patrick Aboyoun
• 2009/01/18 Re: [Bioc-sig-seq] adapter removal Kasper Daniel Hansen
• 2009/01/17 Re: [Bioc-sig-seq] adapter removal Patrick Aboyoun
• 2009/01/17 Re: [Bioc-sig-seq] adapter removal joseph franklin
• 2009/01/15 Re: [Bioc-sig-seq] general quesion regarding chipseq Steve Lianoglou
• 2009/01/15 [Bioc-sig-seq] general quesion regarding chipseq Tobias Straub
• 2009/01/15 [Bioc-sig-seq] Solexa fastq files and BLAT Daniel Brewer
• 2009/01/15 Re: [Bioc-sig-seq] adapter removal David A.G
• 2009/01/14 Re: [Bioc-sig-seq] adapter removal Patrick Aboyoun
• 2009/01/14 Re: [Bioc-sig-seq] adapter removal James W. MacDonald
• 2009/01/14 Re: [Bioc-sig-seq] adapter removal Patrick Aboyoun
• 2009/01/14 Re: [Bioc-sig-seq] adapter removal Cei Abreu-Goodger
• 2009/01/14 Re: [Bioc-sig-seq] adapter removal Martin Morgan
• 2009/01/14 Re: [Bioc-sig-seq] adapter removal David A.G
• 2009/01/14 Re: [Bioc-sig-seq] adapter removal Martin Morgan
• 2009/01/14 Re: [Bioc-sig-seq] adapter removal David A.G
• 2009/01/13 Re: [Bioc-sig-seq] Solexa quality to numeric conversion Martin Morgan
• 2009/01/13 [Bioc-sig-seq] Solexa quality to numeric conversion James W. MacDonald
• 2009/01/12 Re: [Bioc-sig-seq] Bioc-sig-sequencing Digest, Vol 11, Issue 4 John Burke
• 2009/01/10 Re: [Bioc-sig-seq] power calculations Bogdan Tanasa
• 2009/01/09 Re: [Bioc-sig-seq] adapter removal Martin Morgan
• 2009/01/09 Re: [Bioc-sig-seq] adapter removal David A.G
• 2009/01/08 Re: [Bioc-sig-seq] adapter removal casioqv
• 2009/01/08 Re: [Bioc-sig-seq] adapter removal Martin Morgan
• 2009/01/08 Re: [Bioc-sig-seq] adapter removal James W. MacDonald
• 2009/01/08 Re: [Bioc-sig-seq] adapter removal Patrick Aboyoun
• 2009/01/08 Re: [Bioc-sig-seq] adapter removal Martin Morgan
• 2009/01/08 Re: [Bioc-sig-seq] adapter removal Martin Morgan
• 2009/01/08 Re: [Bioc-sig-seq] adapter removal David A.G
• 2009/01/08 Re: [Bioc-sig-seq] adapter removal Dan Bolser
• 2009/01/08 [Bioc-sig-seq] adapter removal David A.G
• 2008/12/14 Re: [Bioc-sig-seq] IRanges - coverage Patrick Aboyoun
• 2008/12/13 [Bioc-sig-seq] IRanges - coverage Hans-Ulrich Klein
• 2008/11/21 Re: [Bioc-sig-seq] [BioC] Alignments timings Sean Davis
• 2008/11/21 Re: [Bioc-sig-seq] [BioC] Alignments timings James W. MacDonald
• 2008/11/21 Re: [Bioc-sig-seq] [BioC] Alignments timings Hervé Pagès
• 2008/11/21 [Bioc-sig-seq] Alignments timings Werner Van Belle
• 2008/11/20 [Bioc-sig-seq] Course material for "Using Bioconductor for ChIP-seq experiments" Patrick Aboyoun
• 2008/11/07 Re: [Bioc-sig-seq] Scatter Plot Matrix Clive G. Brown
• 2008/11/07 Re: [Bioc-sig-seq] Scatter Plot Matrix Martin Morgan
• 2008/11/07 Re: [Bioc-sig-seq] Scatter Plot Matrix Clive G. Brown
• 2008/11/07 Re: [Bioc-sig-seq] Scatter Plot Matrix Martin Morgan
• 2008/11/07 Re: [Bioc-sig-seq] Scatter Plot Matrix Clive G. Brown
• 2008/11/07 Re: [Bioc-sig-seq] Scatter Plot Matrix Clive G. Brown
• 2008/11/07 Re: [Bioc-sig-seq] Scatter Plot Matrix James W. MacDonald
• 2008/11/06 Re: [Bioc-sig-seq] Scatter Plot Matrix Martin Morgan
• 2008/11/04 Re: [Bioc-sig-seq] SNP counting (Biostrings ?) question Wolfgang Raffelsberger
• 2008/11/04 Re: [Bioc-sig-seq] ShortRead and calibrated qualities Victor Ruotti
• 2008/11/04 Re: [Bioc-sig-seq] ShortRead and calibrated qualities Martin Morgan
• 2008/11/04 Re: [Bioc-sig-seq] ChIPseq, repeated regions and multiple matched tags Sean Davis
• 2008/11/04 Re: [Bioc-sig-seq] ChIPseq, repeated regions and multiple matched tags Simon Anders
• 2008/11/04 Re: [Bioc-sig-seq] ChIPseq, repeated regions and multiple matched tags Sean Davis
• 2008/11/04 [Bioc-sig-seq] ChIPseq, repeated regions and multiple matched tags Romain FENOUIL
• 2008/11/04 [Bioc-sig-seq] BMC Bioinf paper: probabilistic base calling of Solexa sequencing data, Rougemont et al. Wolfgang Huber

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