Hi everyone. I would like to have your comments on the best way to analyze the ChIP-seq data in order to identify the peaks of TF binding. We have used Solexa alignment program (ELAND) to align the sequences and I do have the genome coordinates for all the tags. The question I want to address now is : what is the best model l to use in order to select the peaks in the data (and what is the most appropriate cut-off for the number of tags in a peak) ...
Any suggestions will be greatly appreciated. Thanks very much. Bogdan _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
