Please consider adding this example to the online help. It will be much appreciated by ChIP-seqers.
Thank you, Ivan Ivan Gregoretti, PhD National Institute of Diabetes and Digestive and Kidney Diseases National Institutes of Health On Tue, Apr 27, 2010 at 6:08 PM, Michael Lawrence <[email protected]> wrote: > Your reducer function could be something like: > > function(rds) do.call(c, rds) > > On Tue, Apr 27, 2010 at 11:32 AM, Ivan Gregoretti <[email protected]> > wrote: >> >> Hello listers, >> >> Can anybody show how to consolidate the list output of rdapply to >> RangedData? >> >> >> >> rdapply accepts a RangedData objects and outputs a list. That may be >> inconvenient and that is why there is the >> reducerFun argument to help you undo that list. >> >> The vignette shows an example where a list of numbers is coerced into >> a vector of numbers. It is done quite simply with >> >> reducerFun = unlist, >> reducerParams = list(use.names = FALSE) >> >> Well, that is simple if, like in the example, the elements of the >> lists are just integers. What if the elements of the list are >> RangedData? >> >> Can anybody show an example? I tried and failed. >> >> Thank you >> >> Ivan >> >> Ivan Gregoretti, PhD >> National Institute of Diabetes and Digestive and Kidney Diseases >> National Institutes of Health >> >> _______________________________________________ >> Bioc-sig-sequencing mailing list >> [email protected] >> https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing > > _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
