How do I download the GeneBank record AF441733.2? (Mus musculus clone RP23-225M6 45S pre-ribosomal RNA gene, partial sequence; and intergenic spacer, partial sequence)
I know that I could manually download it as a fasta file and then read it into R but there is probably a single step strategy. I wanted to use biomaRt but since the record seems to be absent from Ensembl, I can't expect biomaRt to fetch it. Can I? Thank you, Ivan > sessionInfo() R version 2.11.1 (2010-05-31) x86_64-redhat-linux-gnu locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 [4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=C LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C [10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] biomaRt_2.4.0 loaded via a namespace (and not attached): [1] RCurl_1.4-2 XML_3.1-0 _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
