On Tue, Aug 3, 2010 at 9:45 PM, Michael Lawrence <[email protected]> wrote: > The problem is that IntervalTree will not respect the separation of > spaces/chromosomes. Any time you call ranges() on a GRanges, you lose that > information.
Ah ... indeed. I guess it's now obvious that I (almost) always work on the chromosome-at-a-time level ... :-) Cheers, -steve -- Steve Lianoglou Graduate Student: Computational Systems Biology | Memorial Sloan-Kettering Cancer Center | Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
