Hello,
I've read the help page, and I believe my three data frames meet all the
requirements, but the creation of the TranscriptDb results in an error message.
My code example is :
library(GenomicFeatures)
download.file("http://129.94.136.7/file_dump/dario/dataFramesForTrDB.Rdata";,
"./3DF.Rdata") # 2.2 MB
load("3DF.Rdata") # transcripts, splicings, genes.
db <- makeTranscriptDb(transcripts, splicings, genes)
Error in sqliteExecStatement(con, statement, bind.data) :
RS-DBI driver: (RS_SQLite_exec: could not execute: constraint failed)
Session info is :
R version 2.13.0 (2011-04-13)
Platform: x86_64-unknown-linux-gnu (64-bit)
... ...
other attached packages:
[1] GenomicFeatures_1.4.1 GenomicRanges_1.4.5 IRanges_1.10.4
loaded via a namespace (and not attached):
[1] Biobase_2.11.10 biomaRt_2.7.2 Biostrings_2.19.18
[4] BSgenome_1.19.6 DBI_0.2-5 RCurl_1.6-1
[7] RSQLite_0.9-4 rtracklayer_1.11.12 XML_3.4-0
--------------------------------------
Dario Strbenac
Research Assistant
Cancer Epigenetics
Garvan Institute of Medical Research
Darlinghurst NSW 2010
Australia
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