Dear Satya, All these scores do have to be calculated using substitution matrices like PAM and BLOSUM.
On Tue, Nov 10, 2009 at 1:52 AM, Satya Swarup Samal <satya123...@gmail.com>wrote: > Dear all, > > In sequence alignment algorithms e.g. Smith waterman or Needleman wunch, we > have match, mismatch and gap score while comparing two sequences. But how we > calculate these scores ? Is there any mathematical way or its just based on > trial and error ? > > Thanx in advance > > -- > Best Regards > Satya S. Samal > > -- > Dear Member, > > http://www.cbclickbank.com/biofriend/ > > Biofriend is now with great features. Like No email, catgorywise que & ans. > rating and much more visit biofriend and We are sure, You will definitely > like it. > > Ask your question Here ! > http://www.cbclickbank.com/biofriend/ > Get your Answers. > > Support Us to Help Others > > Biofriend India Team > > > Please visit this link & send your friends too > ========================================= > > " No email " visit > http://www.cbclickbank.com/bioinformatics/giudence.htm -- Regards, C. R. Hemalatha. -- Dear Member, http://www.cbclickbank.com/biofriend/ Biofriend is now with great features. Like No email, catgorywise que & ans. rating and much more visit biofriend and We are sure, You will definitely like it. Ask your question Here ! http://www.cbclickbank.com/biofriend/ Get your Answers. Support Us to Help Others Biofriend India Team Please visit this link & send your friends too ========================================= " No email " visit http://www.cbclickbank.com/bioinformatics/giudence.htm
