I just uploaded seqloc-0.1 to Hackage. This package is a useful library for manipulating "sequence locations", which I use principally for handling gene annotations. It's related to the sequence location code that I submitted to the bio library--that code has since bitrotted.
I have a related package to work with data files in GTF and BED format that I plan to polish up sometime soon. I'm definitely interested in interoperability with other packages--I think the SeqLike typeclass in the module should provide a pretty nice interface for many different sequence data type implementations. There's a quick tutorial / example I put together on the package's linked homepage at http://www.ingolia-lab.org/software/seqloc Best, --Nick _______________________________________________ Biohaskell mailing list [email protected] http://malde.org/cgi-bin/mailman/listinfo/biohaskell
