Hi,
Has anyone put some thought into how BioHaskell might support a circular
Sequence type? I'm working on the mitochondrial genome, and it's always
a hassle to work on the 'control region,' the segment that spans the
beginning/end of the mitochondrial chromosome. I'd imagine that working
on circular bacterial genomes, viruses and plasmids yields similar problems.
Just off the top of my head, I'd think that using some form of the
'repeat' function to (lazily) produce an endlessly-repeating sequence
could simulate a circular sequence.
Thoughts?
Dan
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