Hi, below are my feeble attempts at writing while flying back home, feel free to add, delete, whatever...
*** Biohaskell *** Under the Biohaskell umbrella, we provide a number of libraries and programs designed to solve bioinformatics problems. Regarding the diverse problems that are being tackled by the Haskell bioinformatics community, instead of providing one monolithic library, we opted for a number of interconnected, smaller ones, designed to solve one or a small set of problems, each. Currently, libraries are available for sequence related problems and (Ketil, ...): - Secondary structure prediction of single RNA molecules (a Haskell port of the Vienna RNAfold program, a polynomial-time version of the MC-fold pipeline, and a novel algorithm, RNAwolf, for extended secondary structure prediction). This includes the ability to work with different file formats, representing canonical RNA structures and non-canonical extensions. - non-coding RNA prediction via Infernal and Rfam is supported with a set of programs, both on the level producing models, and interpreting results, as well as towards the evaluation of covariance models independent of specific input. Gruss, Christian * Christian Höner zu Siederdissen <[email protected]> [09.10.2011 01:20]: > Hi everybody, > > the Haskell hcar is coming up. I'll try to get "my" part into a nicely > descriptive form -- I can update my homepage at the same time. > > Then it'll go to here, we should try to have a combined Biohaskell > report again, yes? > > Viele Gruesse, > Christian > _______________________________________________ > Biohaskell mailing list > [email protected] > http://malde.org/cgi-bin/mailman/listinfo/biohaskell
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